Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq259 113 5e-20 >seq259 Length=1927424 Score = 113 bits (124), Expect = 5e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 10137 TCAAGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAG 10196 || |||| ||| |||| || || || | || |||||||||||||||||||||| |||| Sbjct 1895394 TCTAGGGTTACTTGGGTTGCCAAACCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAG 1895335 Query 10197 TAATGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCG 10256 | ||||| ||||| || || || | ||| | ||| ||||| ||||||||||||| | Sbjct 1895334 TGATGCCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAACTCTCTGGGAG 1895275 Query 10257 AGAATCTAAAGACCCTAAGG 10276 |||| || |||||||| ||| Sbjct 1895274 AGAAGCTGAAGACCCTCAGG 1895255 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||| ||||||| ||||||||| || || || |||| | Sbjct 1893184 AGCTCCAAGAGAAAGGCGTCTACAAGGCCATGAATGAATTTGATATCTTCATCAACTGCA 1893125 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| ||||||||||||| ||||| Sbjct 1893124 TAGAAACATACATGACCATCAAAAT 1893100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546632355819520