Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq55 156 6e-33 seq1852 118 2e-21 >seq55 Length=3648298 Score = 156 bits (172), Expect = 6e-33 Identities = 193/264 (73%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 8712 TACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGA 8771 |||||| |||||||| || | ||| | |||| |||| ||| ||||| ||||| || | Sbjct 3165057 TACAGATGAGAGACTGAATTGAGGCAGTGTTGATGATCTTAAAACCCACTTCTCCTCCAA 3164998 Query 8772 AGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGG 8831 | ||||| || |||||||| || || |||||| || |||| || ||||| |||| Sbjct 3164997 AAGTGCTTGGCTTCCAGTATTGAGGAGAACAGATGGGATTACCCATAAGTCCTTTCAGGG 3164938 Query 8832 AAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTT 8891 | || || || || || || | ||| |||| || ||||| || | ||||| ||||||| Sbjct 3164937 AGAATGGTGCTCCGAGTTCTACCATGGTCTCCCCAAAGATAGCATCTGGACGAGGCTTTT 3164878 Query 8892 CCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTT 8951 |||||| | | | ||||| ||||| || |||||||| | ||| ||||| | | | Sbjct 3164877 CCACCAGCAGGGCAGGGTACAGCTCCATGGCATCGATGTCACTGTAGAGGGCTTTCAACT 3164818 Query 8952 CGGCAGCGATTTCCTTTTCTCCTG 8975 | ||||| |||||||| ||||||| Sbjct 3164817 CTGCAGCCATTTCCTTCTCTCCTG 3164794 Score = 129 bits (142), Expect = 8e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || || || || || ||| || ||||| || |||| || ||||| |||||| Sbjct 3163531 GTCTGGAATAGCTGCTCATCGTCCCACTCAGGATGCTCCTGTTTAAGCACATCACACACT 3163472 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 |||||||| |||| |||||||| ||||| |||||||| |||||||||||||| ||||| Sbjct 3163471 CTGTTGTGCTCCCGAAGCCAGATGGTAGCATACATCATCAGACCAGGCACCAGCCCAAAG 3163412 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || | | || || | ||||| || ||||| | | Sbjct 3163411 ACCTCCTGCCCCACAGCAAACCGTAGGTGCTCAGGGGTGTGAGGAGGGTACATCATCTCC 3163352 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 ||| | |||||||| | || ||||||| || || |||| Sbjct 3163351 GCCTCGGTGTCTTTGACTGTAGGAGGATACACCTCTCCACCAAT 3163308 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||| |||||| | || ||||| | ||| ||| | || Sbjct 3162114 TCTTACCCCATGGCCCAGTCCTCGGGTGAAGCCAGGTCCTCGTTTCTGATCTGTCTTGAA 3162055 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || | ||| |||||||| Sbjct 3162054 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCTTGGGGATC 3161995 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 || |||| | |||| |||||| |||||||| ||| Sbjct 3161994 AGGGATGAACTTTCTCCTTAGAAGAACTTTTTCCAGAAC 3161956 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | ||||| || || || | || || ||||| || || | Sbjct 3161407 TCACCTTTCACACCCATGGGAGTCGGGCAGTCATCAGCCACAGGAGGAAGGGCTCTGGTA 3161348 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||||||||||||||| |||||||||||| || | |||| | | ||||| | Sbjct 3161347 TAGTAGGAGAGATTGGAGAAGGCTTCCCAGCTTTTATAACCATAGTGCACATTGTAAGTT 3161288 Query 10407 GGAGGGCTGTCAATCAAATCGGATCT 10432 || || ||||||||||||| ||||| Sbjct 3161287 GGTGGACTGTCAATCAAATGTGATCT 3161262 >seq1852 Length=271539 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || ||||| |||||||| ||||| || | ||||| || ||| || Sbjct 7791 AAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATATTCTGGGGAACAAATGGGATTT 7850 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | || || ||||||||||| |||||||| | ||| | || ||||| || |||||| Sbjct 7851 CCTAGAAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATACTCTCCCCAAAGATG 7910 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || |||||||| | | || | || ||||| | ||| |||||||| Sbjct 7911 GAGTTGGGCTGGCACTTTTCCAGAAGCAGCCCCGGATAGAACTCTAAAGCGTCGATGTCA 7970 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||| || || | || || || |||||||| || |||| Sbjct 7971 CCGTATAGCTCCTCCAACTCAGCGGCCATTTCCTTCTCCCCTG 8013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707558088762880