Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq130 123 2e-23 seq1045 120 3e-22 seq59 114 1e-20 seq9 114 1e-20 seq306 111 1e-19 seq420 93.3 4e-14 seq1071 91.5 1e-13 seq383 84.2 2e-11 >seq130 Length=2658597 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| |||||| || || || || || | ||| ||||| || ||| | |||||| Sbjct 942300 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCAGCCATCCTC 942241 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| |||| || | ||| ||||| || | ||||| ||||| || || | Sbjct 942240 CAGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATCTTG 942181 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || |||||||| ||| |||||| | | ||||| |||| |||||||| || Sbjct 942180 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 942121 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || |||||||||||||||||| Sbjct 942120 GCCCGTCAGGGTCTTCACAAAGATCTGCATG 942090 >seq1045 Length=604390 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || ||||| || | ||| || ||| || ||| | ||| ||| Sbjct 14588 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 14647 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| ||||||| || || ||||| || || || || || || ||||| | Sbjct 14648 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14707 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||||||||| ||| |||||| | | ||||| || | |||||||| || Sbjct 14708 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 14767 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||||||||| Sbjct 14768 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14796 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| ||||| ||||| || | ||| || ||| || | | | ||| ||| Sbjct 14360 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 14419 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| ||||||| | || ||||| || || || || || || ||||| | Sbjct 14420 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14479 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||||||||| ||| |||||| | | ||||| || | |||||||| || Sbjct 14480 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 14539 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||||||||| Sbjct 14540 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14568 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| ||||| ||||| || | ||| || ||| || | | | ||| ||| Sbjct 13676 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 13735 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| ||||||| | || ||||| || || || || || || ||||| | Sbjct 13736 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 13795 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||||||| ||| |||||| | | ||||| || | ||||||||||| Sbjct 13796 ATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTG 13855 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||||||||| Sbjct 13856 CCTGTCAGGGTCTTCACAAAGATCTGCAT 13884 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| ||||| ||||| || | ||| || ||| || | | | ||| ||| Sbjct 13904 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 13963 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| ||||||| | || ||||| || || || || || || ||||| | Sbjct 13964 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14023 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||||||| ||| |||||| | | ||||| || | ||||||||||| Sbjct 14024 ATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTG 14083 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||||||||| Sbjct 14084 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14112 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| ||||| ||||| || | ||| || ||| || | | | ||| ||| Sbjct 14132 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCC 14191 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| ||||||| | || ||||| || || || || || || ||||| | Sbjct 14192 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14251 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||||||| ||| |||||| | | ||||| || | ||||||||||| Sbjct 14252 ATCCATGCCTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTG 14311 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||||||||| Sbjct 14312 CCTGTCAGGGTCTTCACAAAGATCTGCAT 14340 >seq59 Length=3472997 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| |||||| || || || || || | ||| || || || ||| | |||||| Sbjct 2114008 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGGGGCCATCCTC 2114067 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| |||| || | ||| || || || || ||||| ||||| || || | Sbjct 2114068 CAGCTGCTTGCCGGCAAATATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCCTTATCTTG 2114127 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || |||||||| ||| |||| | | | ||||| |||| |||||||| || Sbjct 2114128 GATCTTGGCCTTGACATTCTCGATGGTGTGACTGGGCTCGACCTCAAGAGTGATGGTCTT 2114187 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || |||||||||||||||||| Sbjct 2114188 GCCCGTCAGGGTCTTCACAAAGATCTGCATG 2114218 >seq9 Length=5865362 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| || || || || || | ||| || || || ||| | |||||| Sbjct 1315838 CACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGATGTGGCCATCCTC 1315897 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| |||| || | ||| ||||| || || ||||| ||||| || || | Sbjct 1315898 CAGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCTTG 1315957 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || |||||| | || ||| || | | ||||| |||| |||||||| || Sbjct 1315958 GATCTTGGCCTTGGCATTCTTGATGGTGCCACTGGGCTCGACCTCAAGAGTGATGGTCTT 1316017 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || | || |||||||||||||||||| Sbjct 1316018 TCCCGTCATGGTCTTCACAAAGATCTGCATG 1316048 >seq306 Length=1726031 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| |||||| || || || |||| | ||| || || || ||| |||||| Sbjct 299813 CACCAGGTGCAAGGTGGACTCATTTTATATGTTGTAGTCTGACAGGGTGCGTCCATCCTC 299754 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| |||| || | ||| ||||| | || ||||| ||||| || || | Sbjct 299753 CAGCTGCTTACCGGCAAATATCAGTCTCTGCTGGTTAGGTGGAATGCCTTCCTTATCTTG 299694 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || | |||||| ||| ||||||| | | || || |||| |||||||| || Sbjct 299693 GATCTTGGTCTTGACATTCTCGATAGTGTCACTGGGCTCTACCTCAAAAGTGATGGTCTT 299634 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || |||||||||||| |||||||| Sbjct 299633 GCCTGTCAGGGTTTTCACAAAGCTCTGCATG 299603 >seq420 Length=1427458 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | || || |||||||| | ||| || || || ||| | | Sbjct 1349679 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGGCC 1349738 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || ||||||| | || ||| | || || ||||| ||||| || Sbjct 1349739 ATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCCGGTCAGGGGGAATTCCTTCCTT 1349798 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 | | || || ||||| || | | |||||| | | | || || || |||||||| Sbjct 1349799 ATTCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGATCGTGAT 1349858 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || ||||| || |||| || |||||||| Sbjct 1349859 GGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 1349894 >seq1071 Length=588399 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA-ATACCTTCTT 94910 ||| |||||||| || ||| ||||||||| || |||| || || || || || || | Sbjct 405736 ATCTTCCAGCTGCTTACCGGCAAAGATTAGCCTCAGCTGGTCAGGGGGGTATGCCCTCCT 405795 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| || || ||||||||||| | | ||||| | | ||||| || | |||| Sbjct 405796 TGTCCTAGATCTTTGCCTTGACATTCTCAATGGTGTCCCTGGGCTCGACCTCCAGGGTGA 405855 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || ||||||||||||||||| Sbjct 405856 TGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 405892 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| || || ||||| || | || || ||| | ||| | ||| ||| Sbjct 405912 ACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGACTGGGTGCAGCCATCTTCC 405971 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| ||||| ||||||| | || ||||| || || || || || || ||||| | Sbjct 405972 AGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 406031 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||||||||| | | |||||| | | ||||| || | ||||| | || Sbjct 406032 ATCTTTGCCTTGACACTCTCAATGGTGTCACTGGGCTCGACCTCTAGGTTGATGATCTTA 406091 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||||||| ||||||||||| Sbjct 406092 CCAGTTAAGGTTTTCAGGAAGATCTGCAT 406120 >seq383 Length=1523528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/215 (69%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||||||| | || || | | ||| || || || |||| | |||||| Sbjct 887555 CACCAGGTGCAAAGTGTACTCTTTCTAGATGTTGTAGTCTGACAGGGTGTGGCCATCCTC 887614 Query 94858 CAGCTGTTTTCCGCCAAAGATTAAT------CTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || ||| |||| | ||| || ||||| || || || | ||||| || Sbjct 887615 CAGCTGCTTGCCGGCAAATACAAATATCAGTCTCTGCTGGTCAGGTGGGACCCCTTCCTT 887674 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || | |||||| ||| |||||| || | || || |||| ||||| Sbjct 887675 ATCTTGGATCTTAGTCTTGACATTCTCGATGGTGTCACCG-GATCAACCTCAAGAGTGAT 887733 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| || || | || || |||||||||||||||| Sbjct 887734 GGTCTTGCCTATCAGGGTCTTCACAAAGATCTGCA 887768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447679551486720