Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq302 181 2e-41 seq1804 161 2e-35 seq120 154 2e-33 seq592 150 3e-32 seq144 150 3e-32 >seq302 Length=1732574 Score = 181 bits (200), Expect = 2e-41 Identities = 204/273 (75%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 236891 CGCTAAGCGCCACCGCAAAGTCCTCCGGGACAACATCCAGGGCATCACCAAGCCCGCCAT 236832 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||||||||||||||| ||||||| | | || ||||||| Sbjct 236831 CCGCCGCCTGGCCCGCCGTGGTGGAGTCAAGCGCATCTCTGGCCTCATTTACGAAGAGAC 236772 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 236771 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 236712 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||| |||||||| | ||||| || | || || || || Sbjct 236711 GCACGCGAAGCGCAAGACTGTCACCGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 236652 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 ||||| | | || || || || ||||| |||| Sbjct 236651 CCGTACGCTCTACGGCTTCGGCGGTTAAGCTTC 236619 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||| ||||| || || Sbjct 209436 CGCCAAGCGCCACCGCAAAGTCCTCCGCGACAACATCCAGGGTATCACTAAGCCCGCCAT 209377 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 209376 CCGCCGCTTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 209317 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | ||||| ||| ||| |||| ||||| || ||| || || Sbjct 209316 CCGTGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGATGCGGTCACCTACACGGA 209257 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 209256 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 209197 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | ||||| || || ||||| Sbjct 209196 CCGCACGCTCTATGGCTTCGGCGGTTAA 209169 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 387049 CGCCAAGCGCCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 387108 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 387109 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 387168 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 387169 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 387228 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 387229 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 387288 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | |||| || || || ||||| Sbjct 387289 CCGCACGCTTTACGGCTTCGGCGGTTAA 387316 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 197135 CGCCAAGCGCCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 197194 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 197195 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 197254 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 197255 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 197314 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 197315 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 197374 Query 16672 CCG 16674 ||| Sbjct 197375 CCG 197377 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 389590 CGCCAAGCGCCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 389531 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 389530 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 389471 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 389470 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 389411 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 389410 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 389351 Query 16672 CCG 16674 ||| Sbjct 389350 CCG 389348 >seq1804 Length=282356 Score = 161 bits (178), Expect = 2e-35 Identities = 197/269 (73%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||||| | || || || |||||||| || ||||||||||| || || Sbjct 235446 CGCTAAGCGCCATCGCAAAGTCCTCCGGGACAACATCCAGGGCATCACCAAGCCCGCCAT 235387 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 235386 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 235327 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 235326 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 235267 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 235266 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 235207 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 ||| | | | ||||| || || | |||| Sbjct 235206 CCGCACGCTCTATGGCTTCGGCGGCTAAT 235178 Score = 147 bits (162), Expect = 3e-31 Identities = 189/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || ||||||||||| || || Sbjct 16672 CGCCAAGCGCCACCGCAAGGTTCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 16613 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 16612 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 16553 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 16552 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 16493 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 16492 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 16433 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 16432 CCGCACGCTCTACGGCTTCGG 16412 >seq120 Length=2722307 Score = 154 bits (170), Expect = 2e-33 Identities = 197/269 (73%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | |||| || || |||||||| || ||||||||||| || | Sbjct 1162822 CGCCAAGCGCCACCGCA-AGGTCTTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCA 1162880 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||| || |||||||| |||||||| |||| || | |||| || |||| Sbjct 1162881 TCCGCCGCTTGGCGCGACGTGGTGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 1162940 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| |||| Sbjct 1162941 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCG 1163000 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| |||||||| | ||||| || | || || || | Sbjct 1163001 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTAGTCTACGCGCTCAAGCGCCAGG 1163060 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | ||||| || ||| | ||| Sbjct 1163061 GCCGCACCCTGTATGGCTTCGGAGGCTAA 1163089 >seq592 Length=1071054 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || |||||||| || ||||||||||| ||||| Sbjct 41703 CGCTAAGCGCCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 41762 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 41763 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 41822 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 41823 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 41882 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 41883 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 41942 Query 16672 CCG 16674 || Sbjct 41943 TCG 41945 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || |||||||| || ||||||||||| ||||| Sbjct 44492 CGCTAAGCGCCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 44433 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 44432 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 44373 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 44372 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 44313 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 44312 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 44253 Query 16672 CCG 16674 || Sbjct 44252 TCG 44250 Score = 147 bits (162), Expect = 3e-31 Identities = 189/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || ||||||||||| || || Sbjct 3704 CGCCAAGCGCCACCGCAAGGTTCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 3645 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 3644 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 3585 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 3584 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 3525 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 3524 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 3465 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 3464 CCGCACGCTCTACGGCTTCGG 3444 >seq144 Length=2506305 Score = 150 bits (166), Expect = 3e-32 Identities = 192/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || ||||||||||| || ||||| ||||| || | Sbjct 2387107 CGCCAAGCGACACCGCAAGGTC-CTGCGCGATAACATCCAGGGCATCACAAAGCCCGCCA 2387165 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||| || || || || ||||||||| |||| || | |||| || |||| Sbjct 2387166 TCCGGCGTTTGGCCCGGCGCGGCGGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGA 2387225 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | || | ||||| ||| ||| |||| || ||| || ||| |||| Sbjct 2387226 CCCGCGGCGTTCTCAAAGTGTTCCTGGAGAACGTGATCCGCGACGCTGTCACCTACACCG 2387285 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 2387286 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 2387345 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | ||||||| ||||| Sbjct 2387346 GCCGCACTCTTTATGGCTTTGG 2387367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78975401562336