Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10632 131 2e-25 seq1179 131 2e-25 seq1138 123 3e-23 seq474 102 1e-16 seq2743 93.3 5e-14 >seq10632 Length=3166 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 1723 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 1664 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 1663 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 1604 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 1603 CTGTTTCTTACACCATA 1587 >seq1179 Length=509559 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 478449 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 478390 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 478389 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 478330 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 478329 CTGTTTCTTACACCATA 478313 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 482006 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 481947 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | || || |||||||||||||| || || || || || ||||| || | || |||| Sbjct 481946 TTAATGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGGACAGTCT 481887 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT 62218 |||| | |||||||| | ||| ||||| | | |||| Sbjct 481886 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTT 481850 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 ||||||| || || || || | || || ||||| ||||| || || || || || || | Sbjct 474950 CATATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 474891 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||| ||||| ||||| | |||||| | || ||||| |||| |||||||||| Sbjct 474890 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTCTCAAATGGAT 474831 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | || || || || || |||| ||||| || ||||| || || || | ||| | Sbjct 474830 ATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 474771 Query 62755 TCTTATTAGA 62764 ||||| || Sbjct 474770 GTTTATTTGA 474761 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || || Sbjct 471856 CACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTG 471797 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||| || |||||||| || || || | || |||||| | | || || | ||||| || Sbjct 471796 TTCTTCCTTTCCTGTGTTTTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGG 471737 Query 63335 TTCCAAGTATATGGC 63349 |||| ||| || || Sbjct 471736 CTCCAGGTAAATAGC 471722 >seq1138 Length=537340 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| || || |||||||| ||||| |||||||| || || ||||| | Sbjct 332743 CCTCGTCTCTGCTAATGAGCTCATTGGAAAAGGTGAGGCCGGGCATCAGTCCCCGCTTCT 332802 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || ||||| |||||||| || || || |||||||||| Sbjct 332803 TGAGCCAGAATATTGATGCAAAAGAACCAGAGAAGAAGATCCCCTCCACGGCAGCAAAGG 332862 Query 33446 CAATAAGTCTCTCTCC 33461 | | || | |||||| Sbjct 332863 CCACAACGCGCTCTCC 332878 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTCCCATTT 33013 ||| ||||| |||| || | |||| ||| ||| |||| ||||| || ||||| Sbjct 330849 TTAGAAGTCCGCATCCAAGGTAAAAGAATTCTCTG-TTGAATTCGACATCACCCCCATCC 330907 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 | || ||||| ||||| || || || || || || || |||||||| | ||| || |||| Sbjct 330908 TCTGATATTCCCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATGTTTT 330967 Query 33074 CCATGAAATCAAACGGATT 33092 ||||||| ||||| ||||| Sbjct 330968 CCATGAAGTCAAATGGATT 330986 >seq474 Length=1313924 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||| || || || || ||||| |||||||||||||| ||||| ||||| | ||| | Sbjct 1049862 CCTCGTCCCTGCTGATCAGCTCGTTTGAAAACGTGAGTCCTGGCATGAGGCCTCTCTTCT 1049921 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| | ||| || || ||||| ||||| |||||| | || || |||| Sbjct 1049922 TCAGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAACCGCCTTCTCCGGCGGCGAAGG 1049981 Query 33446 CAATAAGTCTCTCTCC 33461 | | | |||||| || Sbjct 1049982 CCACCACTCTCTCACC 1049997 >seq2743 Length=135121 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348 ||||| |||||| || ||| || ||||||| ||||| |||||| ||||| || || Sbjct 78747 TGTTTGGACATCAGGCAGCTGAAGTCACAGTGCAAACCCTAGTCTCTGCTAATAAGCTCT 78688 Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408 |||||||| || | | |||||| || || | || || ||||| || | || ||| Sbjct 78687 TTGGAAAATCTGCGGCTGGGCATCAGTCCTTGTTTCTTGAGCCAGAACACTGATATGAAA 78628 Query 33409 GATCCAGAAAAGAAGATTCCT 33429 || |||||||||||||||||| Sbjct 78627 GAACCAGAAAAGAAGATTCCT 78607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622097250840320