Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1179 87.8 5e-12 >seq1179 Length=509559 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 364118 AGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACA 364177 |||| |||| ||||||||| || || |||| ||||| || || || || ||| | |||| Sbjct 473730 AGCTTTGGTATGCCATCATCGAGTCTCAGACAGAGACGGGCACCCCATACATGCTCTACA 473789 Query 364178 AAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACC 364237 ||||||| || || || ||| |||||||||| || | || || || | ||||||| Sbjct 473790 AAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACTTGGGAACTATCAAATGCAGCAACC 473849 Query 364238 TATGTACCGAGAT 364250 | ||||| || || Sbjct 473850 TGTGTACAGAAAT 473862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301530846956864