Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1045 95.1 1e-14 seq130 89.7 4e-13 seq40 87.8 2e-12 seq59 84.2 2e-11 >seq1045 Length=604390 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| | || |||||| ||| Sbjct 14568 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 14509 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| |||||| ||||| || ||||| || || || || Sbjct 14508 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 14449 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||||| | | | | ||| || ||| Sbjct 14448 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAAC 14389 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 14388 ATCCAGAAGGAGTCTAC 14372 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | || || || | || ||| | || |||||| ||| Sbjct 14797 AATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 14738 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| |||||| ||||| || ||||| || || || || Sbjct 14737 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 14678 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | | ||||||||| || ||||||| | | | | | ||| || || Sbjct 14677 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 14618 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 14617 CATCCAGAAGGAGTCCAC 14600 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || ||| | || ||| | || |||||| || Sbjct 13884 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCGT 13825 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| | ||| ||||| || ||||| || || || || Sbjct 13824 GACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 13765 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||||| | | | | ||| || ||| Sbjct 13764 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAAC 13705 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 13704 ATCCAGAAGGAGTCTAC 13688 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || ||| | || ||| | || |||||| || Sbjct 14112 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCGT 14053 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| | ||| ||||| || ||||| || || || || Sbjct 14052 GACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 13993 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||||| | | | | ||| || ||| Sbjct 13992 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAAC 13933 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 13932 ATCCAGAAGGAGTCTAC 13916 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || ||| | || ||| | || |||||| || Sbjct 14340 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCGT 14281 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| | ||| ||||| || ||||| || || || || Sbjct 14280 GACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 14221 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||||| | | | | ||| || ||| Sbjct 14220 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAAC 14161 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 14160 ATCCAGAAGGAGTCTAC 14144 >seq130 Length=2658597 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | || || || | || || | || |||||| || Sbjct 942088 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 942147 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | ||||| ||||| || || |||||||| || | || Sbjct 942148 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCATCTGAC 942207 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATT 24165 || ||||||||||| | | ||||||||| || || |||| | | | | |||| |||| Sbjct 942208 CAGCAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCTGCACCCTGTCA--GATT 942265 Query 24166 ATAACATTCAAAAAGAATCTAC 24187 | ||||| || ||||| || || Sbjct 942266 ACAACATCCAGAAAGAGTCCAC 942287 >seq40 Length=4171579 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | || || || || | || || || | || ||| | || || ||| | Sbjct 2179604 CAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCC 2179663 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||||||||| | ||||| ||||| || ||||| ||||| || ||||| Sbjct 2179664 CAGTGACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGA 2179723 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| |||| || | | ||||||||| || ||||||| | | | | ||||| Sbjct 2179724 CCAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 2179783 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || ||||| || || Sbjct 2179784 CAACATCCAGAAAGAGTCCAC 2179804 >seq59 Length=3472997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | || || || | || || | || |||||| || Sbjct 2114220 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 2114161 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||||| | ||||| ||||| || || |||||||| || || || Sbjct 2114160 AGTCACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCACCTGAC 2114101 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATT 24165 |||||||||||||| | | ||||||||| || || |||| | | | |||| || | Sbjct 2114100 CAACAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCCCACCCTGTCA--GACT 2114043 Query 24166 ATAACATTCAAAAAGAATCTAC 24187 | ||||| || ||||| || || Sbjct 2114042 ACAACATCCAGAAAGAGTCCAC 2114021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429364060438560