Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq40 82.4 6e-11 >seq40 Length=4171579 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||| || || || || || || || || ||||| ||| | || |||| || Sbjct 2179605 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCC 2179664 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || ||||| | | | | || || || || |||||||| ||| ||||| || Sbjct 2179665 AGTGACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGAC 2179724 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| |||| || | ||| ||||| || | ||||||| | || | | ||||| Sbjct 2179725 CAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 2179784 Query 115463 AACATTCAAAAAGAGTCTAC 115482 ||||| || |||||||| || Sbjct 2179785 AACATCCAGAAAGAGTCCAC 2179804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424778169130240