Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1045 105 6e-18 seq40 95.1 1e-14 seq370 86.0 6e-12 seq302 86.0 6e-12 seq130 86.0 6e-12 >seq1045 Length=604390 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || |||||||| ||| || |||||| || || ||||||||||| Sbjct 14599 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCC 14658 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| || | ||||||||| || ||||| || || ||||| ||| || ||| Sbjct 14659 GGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTT 14718 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | || || ||| ||||| || | ||| | ||| || || || || || Sbjct 14719 GACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGT 14778 Query 131217 TTTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 14779 CTTCACAAAGATCTGCAT 14796 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || |||||||| ||| || || ||| || || ||||||||||| Sbjct 14371 GGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCC 14430 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | | ||||||||| || ||||| || || ||||| ||| || ||| Sbjct 14431 GGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTT 14490 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | || || ||| ||||| || | ||| | ||| || || || || || Sbjct 14491 GACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGT 14550 Query 131217 TTTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 14551 CTTCACAAAGATCTGCAT 14568 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || |||||||| ||| || || ||| || || ||||||||||| Sbjct 13687 GGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCC 13746 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | | ||||||||| || ||||| || || ||||| ||| ||| Sbjct 13747 GGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCCATGCCTT 13806 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | || || || ||||| || | ||| | |||||| || || || || Sbjct 13807 GACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTGCCTGTCAGGGT 13866 Query 131217 TTTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 13867 CTTCACAAAGATCTGCAT 13884 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || |||||||| ||| || || ||| || || ||||||||||| Sbjct 13915 GGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCC 13974 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | | ||||||||| || ||||| || || ||||| ||| ||| Sbjct 13975 GGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCCATGCCTT 14034 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | || || || ||||| || | ||| | |||||| || || || || Sbjct 14035 GACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTGCCTGTCAGGGT 14094 Query 131217 TTTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 14095 CTTCACAAAGATCTGCAT 14112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || |||||||| ||| || || ||| || || ||||||||||| Sbjct 14143 GGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCC 14202 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | | ||||||||| || ||||| || || ||||| ||| ||| Sbjct 14203 GGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCCATGCCTT 14262 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | || || || ||||| || | ||| | |||||| || || || || Sbjct 14263 GACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTGCCTGTCAGGGT 14322 Query 131217 TTTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 14323 CTTCACAAAGATCTGCAT 14340 >seq40 Length=4171579 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | | || || || | || | ||| ||||| || || ||||||||||| Sbjct 2180064 AGCCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAG 2180005 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || ||||||||||| || |||| | ||||||||||| || | Sbjct 2180004 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGG 2179945 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || || || ||| || ||||| | ||| | || || ||| || | Sbjct 2179944 GGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCA 2179885 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || ||||| || || || ||||||||||||||| Sbjct 2179884 CCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATG 2179835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| ||||| || || ||||||||||| | ||||| || || ||||||||||| Sbjct 2179805 GGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCC 2179746 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | ||||||||||| || ||||| || ||||| || ||| || ||| Sbjct 2179745 GGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTT 2179686 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || | || || ||| ||| | || | ||| | ||| || ||||| || || Sbjct 2179685 GACATTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGT 2179626 Query 131217 TTTTACGAAAATCTGCAT 131234 || ||||| || ||||| Sbjct 2179625 CTTCACGAAGATTTGCAT 2179608 >seq370 Length=1552371 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 131042 ACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGT 131101 ||||||| || |||||||| || || |||||| || || ||||||||||| || Sbjct 218086 ACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAA 218027 Query 131102 AGATTAAACGCTGCTGGTCCGGAGG-GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC 131160 || | | | ||||| ||| || || ||| || || ||||| ||| || ||| | Sbjct 218026 AGTTCAGCCTCTGCTTGTCAGGGGGTGATGCCCTCCTTGTCCTGGATCTTTGCCTTTACA 217967 Query 131161 TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTT 131220 | ||| | || || ||| ||||| || | ||| | ||| ||||| |||| ||||| Sbjct 217966 TTCTCAATGGTGTCACTGGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTC 217907 Query 131221 ACGAAAATCTGCAT 131234 ||||| |||||||| Sbjct 217906 ACGAAGATCTGCAT 217893 >seq302 Length=1732574 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGC-GCGAGT 131080 || ||| | ||| | ||| ||||||||||| ||||||||||| | || | || | | Sbjct 218477 CAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAATC----AAAGTACAGCCA-T 218423 Query 131081 CCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGT 131140 | || || ||||| || || |||| | | ||||||||| ||||| |||||||| || | Sbjct 218422 CTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTAT 218363 Query 131141 CGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGG 131200 | ||| || ||| | | || | ||| || | || || | |||| | | || Sbjct 218362 CCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGATCATGATGG 218303 Query 131201 TTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || || || || || |||||||||||||| Sbjct 218302 TTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 218269 >seq130 Length=2658597 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGC-GCGAGTC 131081 ||||| | || | ||| ||||| || || ||||||||||| || ||||| || | || Sbjct 942302 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCAGCCA-TC 942244 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| ||||||||||| || | || | | ||||||||| | || || ||||| || || Sbjct 942243 CTCCAGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATC 942184 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || ||||| | ||| | || || ||| ||||| || | || | ||| Sbjct 942183 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGT 942124 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || || || || || ||||||||| Sbjct 942123 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 942090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471368785735680