Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1045 113 4e-20 seq1071 84.2 2e-11 seq40 84.2 2e-11 >seq1045 Length=604390 Score = 113 bits (124), Expect = 4e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || ||||||||||||| || ||| | | || Sbjct 14585 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 14644 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || | || ||| ||||| || | |||||| ||||| Sbjct 14645 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 14704 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | ||||| | |||||| |||| |||||||| Sbjct 14705 TGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGG 14762 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | || || ||||| || || ||||| ||||||||| Sbjct 14763 TCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATT 14797 Score = 105 bits (116), Expect = 5e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || || | | || Sbjct 14357 AGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCT 14416 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 14417 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 14476 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | ||||| | |||||| |||| |||||||| Sbjct 14477 TGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGG 14534 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || ||||| |||||||| Sbjct 14535 TCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 14568 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || || | | || Sbjct 13673 AGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCT 13732 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 13733 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 13792 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||| ||| || | | | ||||| | |||||| |||| |||||||| Sbjct 13793 TGGATCCATGC--CTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGG 13850 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| || || ||||| |||||||| Sbjct 13851 TTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 13884 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || || | | || Sbjct 13901 AGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCT 13960 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 13961 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 14020 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||| ||| || | | | ||||| | |||||| |||| |||||||| Sbjct 14021 TGGATCCATGC--CTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGG 14078 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| || || ||||| |||||||| Sbjct 14079 TTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 14112 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || ||||||||||||| || || | | || Sbjct 14129 AGGACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCT 14188 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||| ||||| Sbjct 14189 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 14248 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||| ||| || | | | ||||| | |||||| |||| |||||||| Sbjct 14249 TGGATCCATGC--CTTGACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGG 14306 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| || || ||||| |||||||| Sbjct 14307 TTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 14340 >seq1071 Length=588399 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| | |||||||||| | ||||||||||||| || ||| | | || Sbjct 405683 AGGACCAGGTGCCGGGTGGACTCCT---GGATGTTGTAGTCGGACAGGGTGCGGCCATCT 405739 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC-CACAGGCACGCCCTCTTTGTC 16842 |||| || || || ||| | || |||| | | ||||| || | |||||| ||||| Sbjct 405740 TCCAGCTGCTTACCGGCAAAGATTAGCCTCAGCTGGTCAGGGGGGTATGCCCTCCTTGTC 405799 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 | ||||| ||| || | | | ||||| | |||||| |||| ||||||| Sbjct 405800 CTAGATCTTTGC--CTTGACATTCTCAATGGTGTCCCTGGGCTCGACCTCCAGGGTGATG 405857 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || || ||||| |||||||| Sbjct 405858 GTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 405892 >seq40 Length=4171579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || |||||||| || | | || | | || Sbjct 2180047 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 2179988 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || || ||||| ||||| || | |||||| || || Sbjct 2179987 TCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 2179928 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| | ||| ||| || | |||||||| Sbjct 2179927 TGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGG 2179870 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| || || || ||||||||||| Sbjct 2179869 TCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 2179836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404549115484480