Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq61 105 4e-18 seq324 98.7 7e-16 seq2912 96.9 2e-15 seq5522 91.5 1e-13 seq40 91.5 1e-13 seq342 84.2 1e-11 seq5678 82.4 5e-11 >seq61 Length=3400515 Score = 105 bits (116), Expect = 4e-18 Identities = 79/93 (85%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || ||| |||| Sbjct 1070889 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATTTCGT 1070830 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||| | ||||||||||||||||| Sbjct 1070829 TCATCCATTCATACAAGTCACTAATTAGATGAC 1070797 >seq324 Length=1664026 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 || ||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| Sbjct 795991 CTTTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATGGGTCTCGC 795932 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 795931 GCCGGTATTTAGCCTTA 795915 >seq2912 Length=120370 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||||||| | ||||||||| ||||||| | || ||||| ||||| Sbjct 71278 ACCACCACGAAGTCGCAACACAAGGTGAAGAGTGGACTCCTTTAGGATGTTGTAGTCAGA 71337 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| ||| || || || | || | ||||||||||| || | ||||| || | || Sbjct 71338 CAAAGTACGGTCATCTTCCAGTTACGTCCCGGCAAATATCAGCCTCTGTTGGTCAGGAGG 71397 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || ||| || || ||| ||||| | | || || |||| | Sbjct 71398 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCGAGGGTTCATC 71457 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | |||||| ||||| ||| | | ||| |||| ||| |||||||| || Sbjct 71458 CTCGAGTGTAATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCATCTT 71508 >seq5522 Length=25024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 |||||||||||||||||||||||||| | |||||| ||||| || |||| | || | Sbjct 5211 CCCGTTCCCTTGGCTGTGGTTTCGCTGGGTAGTAGGTAGGGACAGTGGGAATCACATTCA 5152 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACGAT 25992 ||| ||| || ||||||||||| |||||| ||| Sbjct 5151 TCCGTTCTTGTGCGTCACTAATAAGATGATGAT 5119 >seq40 Length=4171579 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | || | |||| || || ||| ||| || || || ||||||||||| Sbjct 2180062 CCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 2180003 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || |||||||| || || || || || |||| |||| Sbjct 2180002 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 2179943 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || || ||| || || ||| ||||||| || || || | ||| || Sbjct 2179942 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 2179883 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || || || || || |||| ||| |||||||| ||||||||| Sbjct 2179882 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATG 2179835 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | || | |||| || || ||| ||| || || || ||||||||||| Sbjct 2179834 CCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 2179775 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || |||||||| || || || || || |||| |||| Sbjct 2179774 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 2179715 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| ||||| ||| || || ||| ||||| | || || || | || || Sbjct 2179714 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCCACC 2179655 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || || || || |||| ||| |||||||| || ||||| || Sbjct 2179654 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 2179605 >seq342 Length=1631468 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||| ||||| Sbjct 1526160 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATTGGTCT--- 1526216 Query 20007 GGTAATATTTAGCCTTA 20023 |||| | |||||||| Sbjct 1526217 GGTATTTAGTAGCCTTA 1526233 >seq5678 Length=22815 Score = 82.4 bits (90), Expect = 5e-11 Identities = 71/88 (81%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 || ||||||||||||||||||||||| | |||||| || || || |||| | || | Sbjct 22728 CCTGTTCCCTTGGCTGTGGTTTCGCTGGGTAGTAGGTATGGACAGTGGGAATCACATTCA 22787 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATG 25987 ||| ||| |||||||||||||| ||||| Sbjct 22788 TCCGTTCTTGCGCGTCACTAATAAGATG 22815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334501623089312