Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1045 111 1e-19 seq40 107 2e-18 seq130 95.1 1e-14 seq59 95.1 1e-14 seq302 91.5 1e-13 seq97588 89.7 4e-13 seq9 84.2 2e-11 >seq1045 Length=604390 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||| ||||| |||| || || ||||||| | || || ||| | Sbjct 14799 ACAATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCC 14740 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| |||||| | ||| ||| ||| ||||| || || || || |||||| Sbjct 14739 AGTGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 14680 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||||||||| || | ||||||| ||||| || ||| ||| Sbjct 14679 CAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 14620 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || || || ||||| || || Sbjct 14619 AACATCCAGAAGGAGTCCACCCTGCA 14594 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || ||| | | Sbjct 14568 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 14509 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| ||| ||| ||||| || || || || |||||||| Sbjct 14508 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 14449 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||| | || ||| ||||| Sbjct 14448 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAAC 14389 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 14388 ATCCAGAAGGAGTCTACCCTGCA 14366 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || ||| ||||||| | || || ||| | | Sbjct 13884 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCGT 13825 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| | ||| ||||| || || || || |||||||| Sbjct 13824 GACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 13765 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||| | || ||| ||||| Sbjct 13764 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAAC 13705 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 13704 ATCCAGAAGGAGTCTACCCTGCA 13682 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || ||| ||||||| | || || ||| | | Sbjct 14112 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCGT 14053 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| | ||| ||||| || || || || |||||||| Sbjct 14052 GACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 13993 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||| | || ||| ||||| Sbjct 13992 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAAC 13933 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 13932 ATCCAGAAGGAGTCTACCCTGCA 13910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || ||| ||||||| | || || ||| | | Sbjct 14340 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCGT 14281 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| | ||| ||||| || || || || |||||||| Sbjct 14280 GACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 14221 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||| | || ||| ||||| Sbjct 14220 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAAC 14161 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 14160 ATCCAGAAGGAGTCTACCCTGCA 14138 >seq40 Length=4171579 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||||| || ||||||| | || |||||| | Sbjct 2179607 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAG 2179666 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| ||||| | ||| || ||| || ||||| || || || || ||||| Sbjct 2179667 TGACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCA 2179726 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 2179727 GCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 2179786 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| ||||| || || Sbjct 2179787 CATCCAGAAAGAGTCCACCCTGCA 2179810 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || ||||| | | Sbjct 2179836 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGT 2179895 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| || || || || || || || ||||| Sbjct 2179896 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 2179955 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 2179956 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2180015 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| ||||| || || Sbjct 2180016 ATCCAGAAAGAGTCCACCCTGCA 2180038 >seq130 Length=2658597 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || ||| | | Sbjct 942091 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 942150 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| || || ||||| |||||| ||||||| Sbjct 942151 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCATCTGACCAG 942210 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||||||||| || | || |||| |||| || |||||||| Sbjct 942211 CAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCTGCACCCTGTCAGATTACAAC 942270 Query 25179 ATTCAAAAAGAATCCAC 25195 || || ||||| ||||| Sbjct 942271 ATCCAGAAAGAGTCCAC 942287 >seq59 Length=3472997 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || ||| | | Sbjct 2114217 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 2114158 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||| |||||| | ||| || ||| || || ||||| ||||||||||||||| Sbjct 2114157 CACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCACCTGACCAA 2114098 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||||||||| || | || |||| | ||| || || ||||| Sbjct 2114097 CAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCCCACCCTGTCAGACTACAAC 2114038 Query 25179 ATTCAAAAAGAATCCAC 25195 || || ||||| ||||| Sbjct 2114037 ATCCAGAAAGAGTCCAC 2114021 >seq302 Length=1732574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/242 (68%), Gaps = 17/242 (7%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || ||| |||||| ||||||| || | || Sbjct 218269 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCATGATCGAAGTTGAACCCTCA 218328 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| || || ||||| ||||| |||||||| Sbjct 218329 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 218388 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || ||| | ||||||| | ||| || ||||||| Sbjct 218389 CAGAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGCTGTACTTTG----ATTACAAC 218444 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG-------------GCTAAGAGGAGG 25225 || ||||| || ||||| || ||| | ||| | || |||||||||||| Sbjct 218445 ATCCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTAGTGGTGCTAAGAGGAGG 218504 Query 25226 AA 25227 || Sbjct 218505 AA 218506 >seq97588 Length=222 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 || || || ||||| ||||||| || ||||||| | || ||||| | |||||| Sbjct 222 ATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGTGACACC 163 Query 25065 ATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 |||||| | ||| || ||| || || || || || || || ||||| ||||| Sbjct 162 ATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAGCGA 103 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || ||||||||||| || | ||||||| |||||| | |||||||| || || Sbjct 102 CTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAG 43 Query 25185 AAAGAATCCACGCTACA 25201 ||||| ||||| || || Sbjct 42 AAAGAGTCCACCCTGCA 26 >seq9 Length=5865362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || ||| | | Sbjct 1316047 ATGCAGATCTTTGTGAAGACCATGACGGGAAAGACCATCACTCTTGAGGTCGAGCCCAGT 1315988 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 | ||| ||| || | || ||| || ||| || || ||||| ||||||||||||| Sbjct 1315987 GGCACCATCAAG--AATGCCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCACCTGACC 1315930 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | | || ||||||||||| || | || |||| | || || || |||| Sbjct 1315929 AGCAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCACATCCTGTCAGACTACA 1315870 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || ||||| ||||| | || || ||||| Sbjct 1315869 ACATCCAGAAAGAGTCCACCTTGCACTTGGTGCT 1315836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432751548094880