Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq130 120 3e-22 seq59 120 3e-22 seq40 118 9e-22 seq97588 113 4e-20 seq9 104 2e-17 seq1045 100 2e-16 seq306 96.9 3e-15 seq263 93.3 4e-14 seq1071 91.5 1e-13 >seq130 Length=2658597 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | || || || || |||||||||| || || || Sbjct 942088 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 942147 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||| ||||| || |||||| | || Sbjct 942148 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCATCTGAC 942207 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || |||||||||||||| ||| | |||||| | ||||| | || |||||| Sbjct 942208 CAGCAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCTGCACCCTGTCAGATTAC 942267 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || ||||| |||||| Sbjct 942268 AACATCCAGAAAGAGTCCACC 942288 >seq59 Length=3472997 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | || || || || |||||||||| || || || Sbjct 2114220 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 2114161 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | | ||| | || || |||| || || ||||| ||||| || |||||||| || Sbjct 2114160 AGTCACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCACCTGAC 2114101 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| | || |||||||||||||| ||| | |||||| || |||| | || || ||| Sbjct 2114100 CAACAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCCCACCCTGTCAGACTAC 2114041 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || ||||| |||||| Sbjct 2114040 AACATCCAGAAAGAGTCCACC 2114020 >seq40 Length=4171579 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| || || |||||| ||| Sbjct 2179836 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGT 2179895 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || || |||||||| || || ||||| || Sbjct 2179896 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 2179955 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 2179956 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2180015 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 2180016 ATCCAGAAAGAGTCCACC 2180033 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || || || | ||||| || || |||| || || ||||| Sbjct 2179602 GTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAG 2179661 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || |||| || || || || || ||||| || || ||| Sbjct 2179662 CCCAGTGACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCC 2179721 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || || || || ||||||||||| ||| | || ||| |||||| | || ||| Sbjct 2179722 GACCAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 2179781 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| |||||| Sbjct 2179782 TACAACATCCAGAAAGAGTCCACC 2179805 >seq97588 Length=222 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 22225 ATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACC 22284 ||||| || || || | ||||| || || |||| || || |||||| ||| || ||| Sbjct 222 ATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGTGACACC 163 Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 | || || |||| || || || || |||||||| || || ||||| || || || Sbjct 162 ATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAGCGA 103 Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 || || ||||||||||| ||| | || ||| |||||| | || ||||||||||| || Sbjct 102 CTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAG 43 Query 22405 AAAGAATCCACC 22416 ||||| |||||| Sbjct 42 AAAGAGTCCACC 31 >seq9 Length=5865362 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | || || || || |||||||||| || || || Sbjct 1316050 AACATGCAGATCTTTGTGAAGACCATGACGGGAAAGACCATCACTCTTGAGGTCGAGCCC 1315991 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | | ||| | | || ||| || || ||||| ||||| || |||||||| || Sbjct 1315990 AGTGGCACCATCAAGAATGCCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCACCTGAC 1315931 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || |||||||||||||| ||| | |||||| || || | | || || ||| Sbjct 1315930 CAGCAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCACATCCTGTCAGACTAC 1315871 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || ||||| |||||| | || || || Sbjct 1315870 AACATCCAGAAAGAGTCCACCTTGCACTTGGT 1315839 >seq1045 Length=604390 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 14796 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 14737 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || || ||||||||||| || || || || || Sbjct 14736 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 14677 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||| ||| | || ||| ||||||| | ||||| |||||| Sbjct 14676 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 14617 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 14616 ATCCAGAAGGAGTCCACC 14599 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 14569 GATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 14510 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || || ||||||||||| || || || || || Sbjct 14509 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 14450 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||||||||| ||| | || ||| |||| || | ||||| ||||| Sbjct 14449 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAA 14390 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || || ||| Sbjct 14389 CATCCAGAAGGAGTCTACC 14371 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || ||||| |||| || || || || || Sbjct 13885 GATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCG 13826 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| | || || ||||||||||| || || || || || Sbjct 13825 TGACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 13766 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||||||||| ||| | || ||| |||| || | ||||| ||||| Sbjct 13765 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAA 13706 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || || ||| Sbjct 13705 CATCCAGAAGGAGTCTACC 13687 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || ||||| |||| || || || || || Sbjct 14113 GATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCG 14054 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| | || || ||||||||||| || || || || || Sbjct 14053 TGACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 13994 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||||||||| ||| | || ||| |||| || | ||||| ||||| Sbjct 13993 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAA 13934 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || || ||| Sbjct 13933 CATCCAGAAGGAGTCTACC 13915 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || ||||| |||| || || || || || Sbjct 14341 GATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCG 14282 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| | || || ||||||||||| || || || || || Sbjct 14281 TGACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 14222 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||||||||| ||| | || ||| |||| || | ||||| ||||| Sbjct 14221 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAA 14162 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || || ||| Sbjct 14161 CATCCAGAAGGAGTCTACC 14143 >seq306 Length=1726031 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| | ||||| ||||| | || || || || ||||| |||| || || || Sbjct 299601 AACATGCAGAGCTTTGTGAAAACCCTGACAGGCAAGACCATCACTTTTGAGGTAGAGCCC 299660 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || |||| || || ||||| ||||| || |||||||| | Sbjct 299661 AGTGACACTATCGAGAATGTCAAGACCAAGATCCAAGATAAGGAAGGCATTCCACCTAAC 299720 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || ||||||||||| || ||| | |||||| |||||| | || || ||| Sbjct 299721 CAGCAGAGACTGATATTTGCCGGTAAGCAGCTGGAGGATGGACGCACCCTGTCAGACTAC 299780 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| |||| || |||||| Sbjct 299781 AACATATAAAATGAGTCCACC 299801 >seq263 Length=1906157 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | || || || || ||||||||| || | || Sbjct 1272392 AACATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCACCACTCTTGAGGTCAAGCCC 1272451 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || ||| || || ||||| ||||| || |||| | | || Sbjct 1272452 AGTGACACCATAGAGAATGCCAAGGCCAAGATCCAAGATAAGGAAGGCATTCTATCTGAC 1272511 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 | || | || |||||||||||||| ||| | ||||| ||||||| | || || ||| Sbjct 1272512 CGGCAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCAGACTAC 1272571 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || ||||| |||||| Sbjct 1272572 AACATCCAGAAAGAGTCCACC 1272592 >seq1071 Length=588399 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/187 (71%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | |||||||| || |||| || || || || ||| Sbjct 405893 GATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 405834 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC-GATC 22336 || ||| | || || |||| ||| || | ||||||||||| || || ||| || | Sbjct 405833 GGACACCATTGAGAATGTCAAGGCAAAGATCTAGGACAAGGAGGGCATACCCCCCTGACC 405774 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | | | || || |||||||| || ||| | || ||| ||||||| | ||||| |||| Sbjct 405773 AGCTGAGGCTAATCTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 405714 Query 22397 ACATTCA 22403 |||| || Sbjct 405713 ACATCCA 405707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419169640038880