Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1824 122 7e-23 seq302 109 5e-19 seq420 96.9 3e-15 seq40 96.9 3e-15 seq1255 91.5 1e-13 seq97588 84.2 2e-11 seq2912 82.4 6e-11 >seq1824 Length=278459 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| |||||||| || | ||| | || || || ||||| |||||||| || Sbjct 166959 ACCGCCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTC--- 167015 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||| | |||||| ||||| |||||||| ||| || | ||||||||| ||||| Sbjct 167016 -AAAGTATGGCCATCTTCCAGTTGCTTACCAGCAAAGACCAGTCTCTGTTGGTCAGGAGG 167074 Query 114275 AATGCCTTCTTTGT-CGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 ||| ||||| || | | ||| |||| |||| | ||| | ||||| | || ||| | Sbjct 167075 AATTCCTTCCTTATTCTGCA-TCTTGGCCTTTACATTTTCTATAGTGTCAGAGGGTTCAA 167133 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || || ||||| || || || || || || ||||||||||| Sbjct 167134 CCTCGAGCGTGACGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 167182 >seq302 Length=1732574 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| | ||| |||||||| || | ||| | || || || ||||| ||||||||||| Sbjct 218492 ACCACTACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAATC--- 218436 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||||| |||||| ||||| |||||||| |||| || | ||| ||||| ||||| Sbjct 218435 -AAAGTACAGCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 218377 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 218376 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 218317 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | | | ||||| || || || || || || ||||||||||| Sbjct 218316 TTCGATCATGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 218269 >seq420 Length=1427458 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| |||||||| || | ||| | || || || ||||| |||||||| || Sbjct 1349667 ACCACCACAAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 1349726 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | |||||| ||||| |||||||| |||| || | ||| |||| || || Sbjct 1349727 CAAAGTATGGCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCCGGTCAGGGGG 1349786 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || | ||||| |||| | ||| | ||||| | || ||| || Sbjct 1349787 AATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 1349846 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || || || || || | ||||||||||| Sbjct 1349847 CTCGATCGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 1349894 >seq40 Length=4171579 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 2180032 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 2179973 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| ||||| ||||| || || ||||| || || || ||||| || Sbjct 2179972 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 2179913 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| ||| || || | ||| | || ||||||||||| || Sbjct 2179912 ACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 2179853 Query 114366 TTTACAAAAATCTGCATG 114383 || || |||||||||||| Sbjct 2179852 TTCACGAAAATCTGCATG 2179835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 2179804 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 2179745 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| ||||| ||||| || || ||||| ||||| || ||||| || Sbjct 2179744 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTG 2179685 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || || | ||| | || ||||||||||| || Sbjct 2179684 ACATTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 2179625 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 2179624 TTCACGAAGATTTGCAT 2179608 >seq1255 Length=466764 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | | || || ||||| |||||||| ||| Sbjct 71505 ACCACCATGAAGTCTCAACACAATATGAAGGCTGGACTCCTTTTGGATGTTGTAGTCGA- 71563 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | | |||| ||||| ||||||||| |||| || | ||| ||||| ||||| Sbjct 71564 CAAAGTATGGCCACCTTCCAGTTGCTTACCAGCGAAGATTAGCCTCTGCTGGTCAGGAGG 71623 Query 114275 AATGCCTTC--TTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||| ||||| | || || ||||| ||||| | ||| | ||||| | || ||| Sbjct 71624 AATTCCTTCCATATGCTGG--ATCTTGGCCTTTAGATTTTCTATAGTGTCCGAGGGTTCA 71681 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | | ||| || | || || || ||||||||||| Sbjct 71682 ACCTCGAGTGTGATGGCTTTCCCTGAAAGGGTCTTCTTGAAAATCTGCAT 71731 >seq97588 Length=222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 32 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 91 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| ||||| ||||| || || ||||| || || || ||||| || Sbjct 92 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 151 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| ||| || || | ||| | || ||||||||||| || Sbjct 152 ACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 211 Query 114366 TTTACAAAAAT 114376 || || ||||| Sbjct 212 TTCACGAAAAT 222 >seq2912 Length=120370 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||| ||| || | || | || || || ||| | |||||||| || Sbjct 71278 ACCACCACGAAGTCGCAACACAAGGTGAAGAGTGGACTCCTTTAGGATGTTGTAGTCAGA 71337 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| |||| | || || | || || | ||||||||| ||||| Sbjct 71338 CAAAGTACGGTCATCTTCCAGTTACGTCCCGGCAAATATCAGCCTCTGTTGGTCAGGAGG 71397 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | |||||| | || ||| | Sbjct 71398 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCGAGGGTTCATC 71457 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || | || || || | ||||||||||| Sbjct 71458 CTCGAGTGTAATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCAT 71505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419575499409024