Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1138 102 2e-16 seq474 91.5 3e-13 >seq1138 Length=537340 Score = 102 bits (112), Expect = 2e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || |||||| | ||||| ||||| ||||||||||| || | || || || || |||||| Sbjct 332866 GTGGCCTTTGCTGCCGTGGAGGGGATCTTCTTCTCTGGTTCTTTTGCATCAATATTCTGG 332807 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 |||||| || || ||||||||| |||||||| || || || ||||| ||||| ||| Sbjct 332806 CTCAAGAAGCGGGGACTGATGCCCGGCCTCACCTTTTCCAATGAGCTCATTAGCAGAGAC 332747 Query 42828 GAGG 42831 |||| Sbjct 332746 GAGG 332743 >seq474 Length=1313924 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| ||||| |||||| || ||| |||||||| || | || || Sbjct 1049997 GGTGAGAGAGTGGTGGCCTTCGCCGCCGGAGAAGGCGGTTTCTTCTCTGGGTCGTTTGCT 1049938 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| ||| ||| || ||||| |||||||| || || ||||| || Sbjct 1049937 GCTATATTCTGGCTGAAGAAGAGAGGCCTC-ATGCCAGGACTCACGTTTTCAAACGAGCT 1049879 Query 42815 CATCAGCAGGGACGAGG 42831 |||||||||||||||| Sbjct 1049878 GATCAGCAGGGACGAGG 1049862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943050743595520