Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq302 116 9e-21 seq40 116 9e-21 seq97588 102 2e-16 seq2912 86.0 1e-11 >seq302 Length=1732574 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||| || ||||| | || ||||||| ||| || |||||||| || || || Sbjct 218491 CCACTACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAATC---- 218436 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || ||||| | ||| || || || |||||||| | ||| || | || Sbjct 218435 AAAGTACAGCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 218376 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| ||| Sbjct 218375 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACT 218316 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| | |||| || ||||| || || ||||| ||||| |||||||| Sbjct 218315 TCGATCATGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 218269 >seq40 Length=4171579 Score = 116 bits (128), Expect = 9e-21 Identities = 168/236 (71%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || || || | ||| ||||| ||||| || || | Sbjct 2179838 CATG-CCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAAT 2179780 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || || || || ||||| || ||||| || Sbjct 2179779 CAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGG 2179720 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || |||||||||||||| || || || || ||||| || | || || | | Sbjct 2179719 GGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTGGGCT 2179660 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | || || || ||||| ||||| |||||||| ||||| ||||| || |||||| || Sbjct 2179659 CCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 2179604 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || || | ||| ||||| ||||| || || || | Sbjct 2180062 CCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 2180003 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| || ||||| || ||| Sbjct 2180002 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 2179943 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || || || || || || || | || || | ||| || Sbjct 2179942 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 2179883 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 2179882 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 2179836 >seq97588 Length=222 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || || | ||| ||||| ||||| || || || | Sbjct 2 CCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 61 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| || ||||| || ||| Sbjct 62 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 121 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || || || || || || || | || || | ||| || Sbjct 122 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 181 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467 || || ||||| ||||| |||||||| ||||| ||||| || Sbjct 182 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAAT 222 >seq2912 Length=120370 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | || || |||| ||| || ||| |||| || ||||| | Sbjct 71279 CCACCACGAAGTCGCAACACAAGGTGAAGAGTGGACTCCTTTAGGATGTTGTAGTCAGAC 71338 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || | ||||| | || | || || || ||||| | |||||| | || Sbjct 71339 AAAGTACGGTCATCTTCCAGTTACGTCCCGGCAAATATCAGCCTCTGTTGGTCAGGAGGA 71398 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | || | ||| | Sbjct 71399 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCGAGGGTTCATCC 71458 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||| | || ||||| | ||| |||||||| Sbjct 71459 TCGAGTGTAATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCAT 71505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178004641525056