Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq40 122 9e-23 seq97588 114 1e-20 seq306 96.9 4e-15 seq64 96.9 4e-15 seq722 93.3 5e-14 seq1804 91.5 2e-13 seq1045 91.5 2e-13 seq270 91.5 2e-13 seq1071 89.7 6e-13 seq77 87.8 2e-12 seq2537 86.0 7e-12 seq1140 84.2 2e-11 >seq40 Length=4171579 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| |||| ||| ||| || || || |||||||||| ||||| || | || || Sbjct 2179816 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2179757 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || ||||||||||||||||||| || | || ||| || ||| | Sbjct 2179756 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 2179697 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| | | | ||||| || | ||||| || | |||||||| ||| Sbjct 2179696 ATCTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTG 2179637 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || || || ||||| || |||||||||||||| || Sbjct 2179636 CCGGTCAGGGTCTTCACGAAGATTTGCATTTTGAC 2179602 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| |||| ||| ||| || || || |||||||||| ||||| || | || || Sbjct 2180044 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2179985 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || ||||||||||||||||||| || | || |||||| ||| | Sbjct 2179984 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 2179925 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| || | | ||||| || | |||||| || | |||||||| ||| Sbjct 2179924 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTG 2179865 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || || || ||||| Sbjct 2179864 CCGGTCAGGGTCTTCACGAAAATCTGCAT 2179836 >seq97588 Length=222 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| |||| ||| ||| || || || |||||||||| ||||| || | || || Sbjct 20 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 79 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || ||||||||||||||||||| || | || |||||| ||| | Sbjct 80 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 139 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || |||| || | | ||||| || | |||||| || | |||||||| ||| Sbjct 140 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTG 199 Query 42180 CCCGTTAGCGTCTTTACAAAGAT 42202 || || || ||||| || || || Sbjct 200 CCGGTCAGGGTCTTCACGAAAAT 222 >seq306 Length=1726031 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||||| ||| ||| |||| || ||||| || | ||| || || | || || Sbjct 299813 CACCAGGTGCAAGGTGGACTCATTTTATATGTTGTAGTCTGACAGGGTGCGTCCATCCTC 299754 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||||||||| || ||||| |||| |||||||| | ||| | || ||||| || Sbjct 299753 CAGCTGCTTACCGGCAAATATCAGTCTCTGCTGGTTAGGTGGAATGCCTTCCTTATCTTG 299694 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| || |||| || | | ||||| || | || || || | |||||||| || Sbjct 299693 GATCTTGGTCTTGACATTCTCGATAGTGTCACTGGGCTCTACCTCAAAAGTGATGGTCTT 299634 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| || || || || |||||| | ||||| || Sbjct 299633 GCCTGTCAGGGTTTTCACAAAGCTCTGCATGTT 299601 >seq64 Length=3359466 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 1128253 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 1128194 Query 57065 TATACTACCGAGGATTGA 57082 ||||||| |||||| ||| Sbjct 1128193 TATACTAACGAGGAGTGA 1128176 >seq722 Length=883633 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 396596 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 396537 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 396536 ACTATACTAACGAGGA 396521 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 409461 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 409520 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 409521 ACTATACTAACGAGGA 409536 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 418473 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 418532 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 418533 ACTATACTAACGAGGA 418548 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 451655 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 451596 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 451595 ATACTAACGAGGA 451583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| || Sbjct 390119 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCCCT 390178 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 390179 ATACTAACGAGGA 390191 >seq1804 Length=282356 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 109340 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 109399 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 109400 ATACTAACGAGGA 109412 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 81173 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 81114 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 81113 TACTAACGAGGA 81102 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 103908 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 103967 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 103968 ATACTAACGAGGA 103980 >seq1045 Length=604390 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 30540 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 30599 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 30600 ATACTAACGAGGA 30612 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 33705 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 33764 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 33765 TACTAACGAGGAT 33777 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | ||| | || | || || |||||||| || || || Sbjct 13693 CTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 13752 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | || |||||||||| ||| | |||| | Sbjct 13753 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCCATGCCTTGACATT 13812 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | | || || || | |||||||||||||| || || ||||| || Sbjct 13813 CTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTGCCTGTCAGGGTCTTCAC 13872 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 13873 AAAGATCTGCAT 13884 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | ||| | || | || || |||||||| || || || Sbjct 13921 CTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 13980 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | || |||||||||| ||| | |||| | Sbjct 13981 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCCATGCCTTGACATT 14040 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | | || || || | |||||||||||||| || || ||||| || Sbjct 14041 CTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTGCCTGTCAGGGTCTTCAC 14100 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 14101 AAAGATCTGCAT 14112 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | ||| | || | || || |||||||| || || || Sbjct 14149 CTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 14208 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | || |||||||||| ||| | |||| | Sbjct 14209 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCCATGCCTTGACATT 14268 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | | || || || | |||||||||||||| || || ||||| || Sbjct 14269 CTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTGCCTGTCAGGGTCTTCAC 14328 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 14329 AAAGATCTGCAT 14340 >seq270 Length=1869736 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 976956 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 977015 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 977016 ATACTAACGAGGA 977028 >seq1071 Length=588399 Score = 89.7 bits (98), Expect = 6e-13 Identities = 132/186 (71%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 42024 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 42083 || || ||||| || | ||| || || | || || ||||||||||| || || || || Sbjct 405707 TGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAGATTAGC 405766 Query 42084 CGCTGCTGGTC-GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCAC 42142 | | ||||||| || || | || |||||||||| ||| ||| |||| || | | Sbjct 405767 CTCAGCTGGTCAGGGGGGTATGCCCTCCTTGTCCTAGATCTTTGCCTTGACATTCTCAAT 405826 Query 42143 CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGAT 42202 ||||| || | || || || | |||||||| || || || || ||||| |||||||| Sbjct 405827 GGTGTCCCTGGGCTCGACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGAT 405886 Query 42203 TTGCAT 42208 ||||| Sbjct 405887 CTGCAT 405892 >seq77 Length=3124153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||||||||||||| ||||||||||| |||||||||| | Sbjct 3065361 TCTCCCCGTCGGGGAATCGAACCCTGGTCTCCCGTGTGACAGGCGGGGATACTCACCATT 3065420 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 3065421 ATACTAACGAGGA 3065433 >seq2537 Length=153131 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/78 (85%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 ||| | | |||||| | |||||||||||||||||||| ||||||||| | ||||||| Sbjct 35513 AATCTCCCCCTCGG---GGAATCGAACCCTGGTCTCCCGAGTGACAGGCAGGGATACTCA 35457 Query 57061 CCACTATACTACCGAGGA 57078 |||||||||||| ||||| Sbjct 35456 CCACTATACTACAGAGGA 35439 >seq1140 Length=536715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 56998 AAAAATTTT-----CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 ||||||||| |||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 152981 AAAAATTTTGCGACCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGG 153040 Query 57053 CATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||| |||||| Sbjct 153041 GATACTAACCACTATACTAACGAGGA 153066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542471640455680