Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1824 89.7 5e-13 seq302 86.0 6e-12 seq420 82.4 8e-11 >seq1824 Length=278459 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | | ||| || | ||| | | | ||||||||||| ||||||||| || Sbjct 166960 CCGCCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAG----TC 167015 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||| | || || ||||| ||||| | | ||| || | ||||||||| ||||| Sbjct 167016 AAAGTATGGCCATCTTCCAGTTGCTTACCAGCAAAGACCAGTCTCTGTTGGTCAGGAGGA 167075 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || | || || |||| | ||| | ||||| | | || ||| Sbjct 167076 ATTCCTTCCTTATTCTGCATCTTGGCCTTTACATTTTCTATAGTGTCAGAGGGTTCAACC 167135 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||||| || || || || || || ||||||||||| Sbjct 167136 TCGAGCGTGACGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 167182 >seq302 Length=1732574 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGT 138460 ||| || | ||| | | | ||||||||||| |||||||| || | ||||| || | | Sbjct 218477 CAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAATC----AAAGTACAGCCA-T 218423 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 | || ||||| ||||| | | |||| || | ||| ||||| ||||| || ||||| || | Sbjct 218422 CTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTAT 218363 Query 138521 CGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 | ||| || |||| | ||| | ||||| | | || || |||| | | | | Sbjct 218362 CCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGATCATGATGG 218303 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || || || || || || ||||||||||| Sbjct 218302 TTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 218269 >seq420 Length=1427458 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||| ||||||||||| || |||| | || Sbjct 1349682 CAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGGCCATC 1349741 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || ||||| ||||| | | |||| || | ||| |||| || || || ||||| || | Sbjct 1349742 TTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCCGGTCAGGGGGAATTCCTTCCTTATT 1349801 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| ||| | || Sbjct 1349802 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGATCGTGATGGT 1349861 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || | ||||||||||| Sbjct 1349862 TTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 1349894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495585299581440