Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq302 95.1 9e-15 seq1824 89.7 4e-13 >seq302 Length=1732574 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||| || | ||| || || | ||||||||| || || ||||| ||||||||||| Sbjct 218491 CCACTACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAATC---- 218436 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| || ||||| | |||| | ||| ||||| ||| Sbjct 218435 AAAGTACAGCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 218376 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| |||||||||| || ||| || Sbjct 218375 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACT 218316 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | | |||||||| || || || || || || ||||| ||||| || Sbjct 218315 TCGATCATGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATCTT 218266 >seq1824 Length=278459 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | ||| || || | ||||||||| || || ||||| |||||||| || Sbjct 166960 CCGCCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCA--- 167016 Query 15010 AGAATTCTCGCG-TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | || ||||| | ||| || ||||| | | || | ||||||||| || Sbjct 167017 --AAGTATGGCCATCTTCCAGTTGCTTACCAGCAAAGACCAGTCTCTGTTGGTCAGGAGG 167074 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| | || ||| |||||| |||||||||| || ||| || Sbjct 167075 AATTCCTTCCTTATTCTGCATCTTGGCCTTTACATTTTCTATAGTGTCAGAGGGTTCAAC 167134 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || | |||||| ||||| || || || || ||||| ||||| || Sbjct 167135 CTCGAGCGTGACGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCATCTT 167185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356916564996320