Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1045 113 4e-20 seq40 109 5e-19 seq97588 96.9 3e-15 seq1071 93.3 4e-14 >seq1045 Length=604390 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| ||| || ||||| || || Sbjct 14600 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 14659 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 14660 GCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 14719 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || ||||| ||||| || Sbjct 14720 ACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTC 14779 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 14780 TTCACAAAGATCTGCAT 14796 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| || | ||| ||| || ||||| || || Sbjct 14372 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCCG 14431 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 14432 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 14491 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || ||||| ||||| || Sbjct 14492 ACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTC 14551 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 14552 TTCACAAAGATCTGCAT 14568 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| || | ||| ||| || ||||| || || Sbjct 13688 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCCG 13747 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| |||| Sbjct 13748 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCCATGCCTTG 13807 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| |||||| || | ||| | |||||||| ||||| || Sbjct 13808 ACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTGCCTGTCAGGGTC 13867 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 13868 TTCACAAAGATCTGCAT 13884 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| || | ||| ||| || ||||| || || Sbjct 13916 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCCG 13975 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| |||| Sbjct 13976 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCCATGCCTTG 14035 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| |||||| || | ||| | |||||||| ||||| || Sbjct 14036 ACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTGCCTGTCAGGGTC 14095 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 14096 TTCACAAAGATCTGCAT 14112 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| || | ||| ||| || ||||| || || Sbjct 14144 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCCG 14203 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| |||| Sbjct 14204 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCCATGCCTTG 14263 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| |||||| || | ||| | |||||||| ||||| || Sbjct 14264 ACATTCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTGCCTGTCAGGGTC 14323 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 14324 TTCACAAAGATCTGCAT 14340 >seq40 Length=4171579 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| || ||||| || || Sbjct 2180032 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 2179973 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| ||||| || ||||||||||| ||| ||| || |||| Sbjct 2179972 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 2179913 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | || || || | ||| | || ||||||||||| || Sbjct 2179912 ACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 2179853 Query 127097 TTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 2179852 TTCACGAAAATCTGCATG 2179835 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| || ||||| || || Sbjct 2179804 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 2179745 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| ||||| || |||||||| || ||| ||| || |||| Sbjct 2179744 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTG 2179685 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 2179684 ACATTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 2179625 Query 127097 TTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 2179624 TTCACGAAGATTTGCAT 2179608 >seq97588 Length=222 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| || ||||| || || Sbjct 32 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 91 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| ||||| || ||||||||||| ||| ||| || |||| Sbjct 92 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 151 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | || || || | ||| | || ||||||||||| || Sbjct 152 ACATTCTCGATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 211 Query 127097 TTTACAAAAAT 127107 || || ||||| Sbjct 212 TTCACGAAAAT 222 >seq1071 Length=588399 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/186 (72%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 || || ||||| ||| || ||||| ||| || ||||| || || || |||| | Sbjct 405707 TGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAGATTAGC 405766 Query 126989 CGCTGCTGATC-GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGAC 127047 | | |||| || ||| |||||||||||||||||| ||| || ||||| | || | Sbjct 405767 CTCAGCTGGTCAGGGGGGTATGCCCTCCTTGTCCTAGATCTTTGCCTTGACATTCTCAAT 405826 Query 127048 GGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| | |||||| || | ||| | || || |||||||| || || ||||| || Sbjct 405827 GGTGTCCCTGGGCTCGACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGAT 405886 Query 127108 CTGCAT 127113 |||||| Sbjct 405887 CTGCAT 405892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474852026708480