Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1824 86.0 6e-12 seq302 84.2 2e-11 seq130 84.2 2e-11 >seq1824 Length=278459 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || |||||||| ||||| || || || ||||||||||| || || || Sbjct 166960 CCGCCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTC---- 167015 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| |||| ||| || || || | | || || || ||||| || ||| Sbjct 167016 AAAGTATGGCCATCTTCCAGTTGCTTACCAGCAAAGACCAGTCTCTGTTGGTCAGGAGGA 167075 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| |||| || || || || | ||||| ||||| || | || || Sbjct 167076 ATTCCTTCCTTATTCTGCATCTTGGCCTTTACATTTTCTATAGTGTCAGAGGGTTCAACC 167135 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || ||||| || || || || || || ||||| |||||| Sbjct 167136 TCGAGCGTGACGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCATC 167183 >seq302 Length=1732574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/222 (68%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 45120 CGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTT 45179 || || |||||||| ||||| || || || ||||||||||| || ||||| | || Sbjct 218485 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAATC----AAAGTA 218430 Query 45180 TTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCT 45239 ||| |||| ||| || || || | |||| | |||||||| || ||||| ||| Sbjct 218429 CAGCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCT 218370 Query 45240 TCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGA 45299 || ||||| || || || || | ||||| ||||| || | || ||||||| Sbjct 218369 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGATC 218310 Query 45300 GTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | | ||||| || || || || || || ||||| |||||| Sbjct 218309 ATGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATC 218268 >seq130 Length=2658597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGAC-GGTTTTAGA-ATCG 45188 ||| || |||| || || || || ||||| || ||||| |||| || | || ||| Sbjct 942300 CACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATC--TGACAGGGTGCAGCCATCC 942243 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 |||| || || || || |||||| || |||||||| | ||||||||||| |||||| Sbjct 942242 TCCAGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATCT 942183 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || || || |||| || | |||||| | |||||| || ||||| | || Sbjct 942182 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 942123 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || ||||| || ||||| Sbjct 942122 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 942091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451386486833920