Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq55 136 6e-27 >seq55 Length=3648298 Score = 136 bits (150), Expect = 6e-27 Identities = 207/293 (71%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || ||||||||||| ||||| |||||||| || |||| | ||| |||| |||||| Sbjct 3164010 CCGGCCAGCAATCTGTCTGGTGAATGATTCAACAAACTGGGTGAGTCCATGCTCGATGAG 3163951 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | ||| |||| | |||| | ||| | || |||| Sbjct 3163950 GATGGAGTTGTTGTAGAGGAACTGTTTAAAGTTGTACTCCTGGTCCTCGATTTGAAAGGT 3163891 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 || || | || | |||||| |||| || || ||||| || || || || |||||||| Sbjct 3163890 GTCGGGTAGCAAGGGGTGCCAGTGGTACAGTGTGTTGAATTCAGCTGCAATGCGGTTCTG 3163831 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| || | ||| ||| || | ||||||||| || | || | ||||||||| Sbjct 3163830 ATACTGGAACTGCTGGT--TGAAAAGCAGCTCCGGGTCGAACTTGAGTTTGAAGTGGTAG 3163773 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 || || || ||||| ||||| | | || | ||| || || || || || || Sbjct 3163772 CCACTCAGGTGCTGCACATAGTCTTCTATCACAATCTTGATAGTCTCTCCTGT 3163720 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| || || ||||| || | ||| ||| Sbjct 3161407 TCACCTTTCACACCCATGGGAGTCGGGCAGTCATCAGCCACAGGAGGAAGGGCTCTGGTA 3161348 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| ||||| || || ||||||||||| || || ||||| | | ||||| Sbjct 3161347 TAGTAGGAGAGATTGGAGAAGGCTTCCCAGCTTTTATAACCATAGTGCACATTGTAAGTT 3161288 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 3161287 GGTGGACTGTCAATCAAATGTGATCTGGCT 3161258 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| ||||| | |||||||| | ||| ||| | || Sbjct 3162114 TCTTACCCCATGGCCCAGTCCTCGGGTGAAGCCAGGTCCTCGTTTCTGATCTGTCTTGAA 3162055 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || | ||| |||||||| Sbjct 3162054 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCTTGGGGATC 3161995 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | |||| | || |||||| |||| || | | ||||||| || || Sbjct 3161994 AGGGATGAACTTTCTCCTTAGAAGAACTTTTTCCAGAACTTCTTTTGAATCAGGAAG 3161938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722740545516800