Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1179 84.2 3e-11 >seq1179 Length=509559 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | |||||| || ||||||| ||| || || || || | Sbjct 482012 CCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATAT 481953 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||| | ||||||||||| |||||||||| | | || || ||||| |||| | Sbjct 481952 GGATGTTTAATGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGGA 481893 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 ||||| || || || |||||||| ||||| Sbjct 481892 CAGTCTTTTGAGAGATTTCCCACACAGTCTT 481862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794070290245120