Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq40 129 6e-25 seq1045 123 2e-23 seq370 102 8e-17 seq97588 98.7 1e-15 seq59 95.1 1e-14 seq1071 93.3 4e-14 seq1138 91.5 1e-13 seq130 91.5 1e-13 seq9 82.4 8e-11 >seq40 Length=4171579 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 2179605 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCC 2179664 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | ||| | || | || |||| || |||||||| || ||| ||||| Sbjct 2179665 AGTGACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGAC 2179724 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | || ||||| |||||||| || | ||||| || || ||| Sbjct 2179725 CAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 2179784 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || ||||| |||| || || | || || ||| Sbjct 2179785 AACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGGGGTGGC 2179835 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 2179836 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGT 2179895 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || ||||| || ||| ||||||| Sbjct 2179896 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 2179955 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| |||||||| || | ||||| || || |||||| Sbjct 2179956 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2180015 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||| |||| || || | || || ||| Sbjct 2180016 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGGGGTGGC 2180063 >seq1045 Length=604390 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 14797 AATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 14738 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 14737 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 14678 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 14677 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 14618 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || ||||| |||| || || Sbjct 14617 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCG 14582 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 14568 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 14509 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 14508 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 14449 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||| |||| |||||||||| Sbjct 14448 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAAC 14389 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| |||| || || Sbjct 14388 ATCCAGAAGGAGTCTACCCTGCACCTGGTCCTCCG 14354 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||||||||||||| | || |||||| || Sbjct 13884 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCGT 13825 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | | |||| ||||| ||||| || ||| | ||||| Sbjct 13824 GACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 13765 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||| |||| |||||||||| Sbjct 13764 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAAC 13705 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| |||| || || Sbjct 13704 ATCCAGAAGGAGTCTACCCTGCACCTGGTCCTCCG 13670 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||||||||||||| | || |||||| || Sbjct 14112 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCGT 14053 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | | |||| ||||| ||||| || ||| | ||||| Sbjct 14052 GACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 13993 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||| |||| |||||||||| Sbjct 13992 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAAC 13933 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| |||| || || Sbjct 13932 ATCCAGAAGGAGTCTACCCTGCACCTGGTCCTCCG 13898 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||||||||||||| | || |||||| || Sbjct 14340 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCGT 14281 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | | |||| ||||| ||||| || ||| | ||||| Sbjct 14280 GACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 14221 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||| |||| |||||||||| Sbjct 14220 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAAC 14161 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| |||| || || Sbjct 14160 ATCCAGAAGGAGTCTACCCTGCACCTGGTCCTCCG 14126 >seq370 Length=1552371 Score = 102 bits (112), Expect = 8e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| | || || || ||||||||| | || |||||| ||| Sbjct 217892 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCCAG 217951 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | | | || | ||| |||| ||||| ||||| || || || ||| Sbjct 217952 TGACACCATTGAGAATGTAAAGGCAAAGATCCAGGACAAGGAGGGCATCACCCCCTGACA 218011 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| | | || ||||| |||||||| || | |||||||| ||||||| Sbjct 218012 AGCAGAGGCTGAACTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACA 218071 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||||| ||||| || ||||| |||| Sbjct 218072 ACATCCAGAAGGAGTGCACCCTGCACCTGGT 218102 >seq97588 Length=222 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 || ||||| || || || || ||||| ||||||||| | || || || ||| |||| | Sbjct 222 ATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGTGACACC 163 Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | | | || | || |||| || || ||||| || ||| ||||||| ||||| Sbjct 162 ATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAGCGA 103 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 ||||| | || ||||| |||||||| || | ||||| || || ||||||||||| Sbjct 102 CTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAG 43 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || | || ||||| |||| || || | || || ||| Sbjct 42 AAAGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGGGGTGGC 1 >seq59 Length=3472997 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || |||||||| |||||||| | || |||||| || Sbjct 2114220 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 2114161 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||| | | | | | || | || |||| || || || || ||||| | ||| Sbjct 2114160 AGTCACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCACCTGAC 2114101 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||| | || || | || ||||| |||||||| || | | |||||| |||||| Sbjct 2114100 CAACAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCCCACCCTGTCAGACTAC 2114041 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||| || || | || |||| ||||||| Sbjct 2114040 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCT 2114006 >seq1071 Length=588399 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/186 (72%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| | || |||||| ||| Sbjct 405892 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTCGAGCCCAGG 405833 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | || | ||| ||| ||||| ||||| || ||| || ||||| Sbjct 405832 GACACCATTGAGAATGTCAAGGCAAAGATCTAGGACAAGGAGGGCATACCCCCCTGACCA 405773 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 | | |||| || | || || || |||||||| || | |||||||| ||||||||| Sbjct 405772 GCTGAGGCTAATCTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 405713 Query 38423 CATCCA 38428 |||||| Sbjct 405712 CATCCA 405707 >seq1138 Length=537340 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455 |||||||| ||||||| || || ||||| |||||||||||||| |||| ||||| Sbjct 335432 ACCTCCTCAGCGGTCCAGAAGGAGGCCTCAGCTTTTTTGTACATCTTCCAGATGTCATGG 335491 Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 |||| |||||||| | || || |||||||| ||||| | ||| | |||||| Sbjct 335492 TATTCGATGGGAAAGACAACGAAGCGGCGGGGATTTTCTCTCAATAACGGCTC 335544 >seq130 Length=2658597 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || |||||||| |||||||| | || |||||| || Sbjct 942088 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 942147 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || || || || ||||| | ||| Sbjct 942148 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCATCTGAC 942207 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| | || || | || ||||| |||||||| || | ||||||| || ||| Sbjct 942208 CAGCAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCTGCACCCTGTCAGATTAC 942267 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||| || || | || |||| ||||||| Sbjct 942268 AACATCCAGAAAGAGTCCACCTTGCACCTGGTGCT 942302 >seq9 Length=5865362 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || | ||||| || |||||||| | || |||||| || Sbjct 1316050 AACATGCAGATCTTTGTGAAGACCATGACGGGAAAGACCATCACTCTTGAGGTCGAGCCC 1315991 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | | || | | | || || || | || |||| || || || || ||||| | || Sbjct 1315990 AGTGGCACCATCAAGAATGCC-AAGGCCAAGATCCAAGATAAGGAAGGCATTCCACCTGA 1315932 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| | || || | || ||||| |||||||| || | | || ||| ||||| Sbjct 1315931 CCAGCAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCACATCCTGTCAGACTA 1315872 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| || || | || |||| |||||||| || Sbjct 1315871 CAACATCCAGAAAGAGTCCACCTTGCACTTGGTGCTTCG 1315833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499490364231680