Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2038 206 1e-47 seq2071 192 2e-43 seq609 170 8e-37 seq43 131 7e-25 seq323 123 1e-22 seq1280 100 1e-15 seq2912 87.8 7e-12 seq1529 87.8 7e-12 seq302 86.0 2e-11 >seq2038 Length=229302 Score = 206 bits (228), Expect = 1e-47 Identities = 469/697 (67%), Gaps = 14/697 (2%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || ||||| ||||| | ||| ||||||| Sbjct 36295 GCAGTTGGTATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAG 36236 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || || || || |||||||| || ||||| || || | || |||||| Sbjct 36235 GTGGAGATAATTGCCAATGACCAGGGTAACCGAACCACGCCAAGCTATGTTGCTTTTACT 36176 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTA--AATTCAAATGCCAA 451089 || ||||| || | | ||| | || || || |||| ||| ||| || ||| Sbjct 36175 GACACAGAACGATTAATTGGGGATGCCGCGAAGAATCA--GGTTGCAATG--AACCCCAC 36120 Query 451090 AAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACA 451149 |||||||| | |||||| |||||| | || || |||| || |||||||| | ||| || Sbjct 36119 CAACACAGTTTTTGATGCCAAACGTCTGATCGGACGTAGGTTTGATGATGCTGTTGTTCA 36060 Query 451150 AAAAGAGAAAAAATTCTTTTCTTATGATG-TAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 || | || || | | | ||| | || || | ||| | |||| | | | Sbjct 36059 GTCTGATATGAAGCACTGGCCCT-TCATGGTGGTGAACGATGCAGGCAGGCCCAAGGTCC 36001 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 ||||| | || ||||| || | |||| ||| || || || | || |||||||||| Sbjct 36000 AAGTAGAATACAAAGGAGAGGCAAAAAGTTTCTACCCAGAGGAGGTGTCCTCTATGGTTC 35941 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 | || || ||||| |||| |||||| ||| | || | ||||| |||| || Sbjct 35940 TGACCAAGATGAAGGAAATTGCAGAAGCCTATCTCGGGAAGACTGTTACCAATGCTGTGG 35881 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 | || || || || || ||||||||| | || || || || || |||||||| ||| || Sbjct 35880 TCACAGTGCCGGCCTACTTCAATGATTCTCAGCGACAGGCTACAAAAGATGCTGGAACTA 35821 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 ||| ||| | ||||| || |||||||| |||||||| || || |||||| | || |||| Sbjct 35820 TTGTTGGCCTCAATGTCCTGCGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTATG 35761 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 | |||| || || | || |||| ||| | | | ||||| || || || | Sbjct 35760 GGCTAGATAA---GAAGGTTGGAGCTGAAAGGAATGTGCTCATTTTTGACTTGGGAGGTG 35704 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 | ||| |||| ||| | || | ||||| ||||| | |||||||| || |||| Sbjct 35703 GTACTTTTGATGTGTCTATCCTCACTATTGAGGATGGAAT-TTTGAAGTCAAATCAACAG 35645 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || | || || ||||| ||||||| Sbjct 35644 CTGGAGACACCCACTTGGGTGGAGAAGACTTTGATAA 35608 >seq2071 Length=224109 Score = 192 bits (212), Expect = 2e-43 Identities = 468/699 (67%), Gaps = 15/699 (2%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || ||||| ||||| | ||| ||||||| Sbjct 58411 GCAGTTGGTATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAA 58470 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || || || || |||||||| || ||||| || || | || |||||| Sbjct 58471 GTGGAGATAATTGCCAATGACCAGGGTAACCGAACCACGCCAAGCTATGTTGCTTTTACT 58530 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTA--AATCAATGGT--AAATTCAAATGCCAA 451089 || ||||| || | | ||| | || || | ||||| ||| ||| || ||| Sbjct 58531 GACACAGAACGATTAATTGGGGATGCCGCGAAGAATCA--GGTTGCAAT--GAACCCCAC 58586 Query 451090 AAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACA 451149 |||||||| | |||||| |||||| | || || |||| || |||||||| | ||| || Sbjct 58587 CAACACAGTTTTTGATGCCAAACGTCTGATCGGACGTAGGTTTGATGATGCTGTTGTTCA 58646 Query 451150 AAAAGAGAAAAAATTCTTTTCTTATGAT-GTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 || | || || | | | || || || || | ||| | |||| | | | Sbjct 58647 GTCTGATATGAAGCACTGGCCCT-TCATGGTGGTGAACGATGCAGGCAGGCCCAAGGTCC 58705 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATT-TCATCTATGGTT 451267 ||||| | || ||||| || | |||| ||| || || || || || | ||||||| Sbjct 58706 AAGTAGAATACAAAGGAGAGGCAAAAAGTTTCTACCCAGAGGAGGTTGTCCTTTATGGTT 58765 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 || || || ||||| |||| |||||| ||| | || | ||||| |||| || Sbjct 58766 CTGACCAAGATGAAGGAAATTGCAGAAGCCTATCTCGGGAAGACTGTTACCAATGCTGTG 58825 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 | || || || || || ||||||||| | || || || || || |||||||| ||| | Sbjct 58826 GTCACAGTGCCGGCCTACTTCAATGATTCTCAGCGACAGGCTACAAAAGATGCTGGAACT 58885 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 |||||||| | ||||| || ||||||| |||||||| || || |||||| | || ||| Sbjct 58886 ATTGCTGGCCTGAATGTCCTGAGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTAT 58945 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || |||| || || | || |||| ||| | | | ||||| || || || Sbjct 58946 GGGCTAGATAA---GAAGGTTGGAGCTGAAAGGAATGTGCTCATTTTTGACTTGGGAGGT 59002 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG-GGTATTTGAAGTAAAGGCAAC 451566 || ||| |||| ||| | | | ||||| ||||| | |||||||| || |||| Sbjct 59003 GGTACTTTTGATGTGTCTATCTTCACTATTGAGGATGGAATTTTTTGAAGTCAAATCAAC 59062 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || | || || ||||| ||||||| Sbjct 59063 AGCTGGAGACACCCACTTGGGTGGAGAAGACTTTGATAA 59101 >seq609 Length=1049191 Score = 170 bits (188), Expect = 8e-37 Identities = 239/331 (72%), Gaps = 12/331 (4%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGTAATTAC 451332 || |||||||| || |||||| ||| |||| || | ||| | |||| || || || Sbjct 132141 AAGATGAAAGAGACTGCAGAA-AATCACTTGGGTCACACAGCAAAAAATGCTGTGATCAC 132083 Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392 || || |||||||||||||| ||||||| || || ||||| ||||| || || || | Sbjct 132082 AGTCCCTGCTTATTTCAATGACTCACAACGACAGGCTACTAAGGATGCTGGCCAGATATC 132023 Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 ||| ||||||| |||||| | ||||||||||||||||| ||||| || || ||||| || Sbjct 132022 TGGGCTAAATGTACTTCGAGTGATTAATGAACCTACAGCTGCTGCCCTGGCCTATGGTCT 131963 Query 451453 AGGAAAATCAAAAGAAACAGAAGaaaaaaaT-ATTTTAGTATTTGATTTTGGTGGAGGAA 451511 ||| | || | ||||| |||||| ||| || | |||||| ||||| |||| Sbjct 131962 -GGACA--------AATCTGAAGATAAAAATCATTGCTGTGTATGATTTAGGTGGTGGAA 131912 Query 451512 CTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATG 451571 | ||||| |||| | || |||| | | || || || || || || | ||||||| Sbjct 131911 CCTTTGATATTTCTATCCTGGAAATTCAGAAAGGAGTGTTGGAGGTGAAATCTACCAATG 131852 Query 451572 GTGATACTCATCTAGGAGGTGAAGATATTGA 451602 | || ||| ||||||||||||| |||| Sbjct 131851 GGGACACTTTCTTAGGAGGTGAAGACTTTGA 131821 >seq43 Length=4087121 Score = 131 bits (144), Expect = 7e-25 Identities = 458/706 (65%), Gaps = 27/706 (4%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| |||| | || ||||| ||||| | ||| ||||||| Sbjct 1519033 GCAGTTGGTATTGATCTTGGCACCATGTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAG 1518974 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || || || || |||||||| || ||||| || | | || |||||| Sbjct 1518973 GTGGAGATAATTGCCAATGACCAGGGTAACCGAACCACGCTAAACTATGTTGCTTTTACT 1518914 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTA--AATTCAAATGCCAA 451089 || ||||| || | | ||| | ||| | || |||| ||| ||| || ||| Sbjct 1518913 GACACAGAATGATTAATTGGG-ATGCTTCGAAGAATCA--GGTTGCAATG--AACCCCAC 1518859 Query 451090 AAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACA 451149 |||||||| | | |||| ||| || | | ||| |||| || |||||||| | ||| || Sbjct 1518858 CAACACAGTTTTTTATGCCAAATGTCTGACTGGACGTAAGTTTGATGATGCTGTTGTTCA 1518799 Query 451150 AAAAGAGAAAAAATTCTTTT---------CTT-ATGATGTAGTAAATCAAAAAGGAAAGC 451199 || | || || ||| ||| || || ||| | ||| | || Sbjct 1518798 GTCTGATACTG--TTGTTCAGCACTGGCCCTTCATGGTG--GTGAATGATGCAGGGAGGC 1518743 Query 451200 CCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCAT 451259 || | | |||| | | || ||||| | | |||| ||| || || || | || | Sbjct 1518742 CCAAGGTCCAAGCAGAATACAAAGGAAAGGCAAAAAATTTGTACCCAGAGGAGGTGTCCT 1518683 Query 451260 CTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTG 451319 |||||||||| || || ||||| ||| |||| ||| | | | ||||| Sbjct 1518682 CTATGGTTCTGACCAAGATGAAGGAACTCACAGAGGCCTATCTCAGGATGACTGTTACGA 1518623 Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || | || || || | || ||||||||| | || | || || || ||||||| Sbjct 1518622 ATGCTGTGGTCACAGTGCCAGTCTACTTCAATGATTCTCAGCAACAGGCTACAAAAGATG 1518563 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 ||| ||||||||| | ||||| | | ||||||| |||||||| || || |||||| Sbjct 1518562 ATGGAACTATTGCTGGCCTCAATGTGCCTTGAATTATCAATGAACCAACTGCTGCTGCTA 1518503 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | || |||||||||| || || | || |||| ||| | | || ||||| | Sbjct 1518502 TTGCTTATGGACTAGATAA---GAAGGTTGGAGCTGAAAGGAAT-TGCTCGTTTTTGACT 1518447 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 | || ||||| | | | || ||| | || | ||||| ||||| | |||||||| | Sbjct 1518446 TGGGAGGAGGTATTTCTAATGTGTCTATCCTAACTATTGAGGATGGAATTTTTGAAGTCA 1518387 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | |||| | | || ||||| | || || ||||| ||||||| Sbjct 1518386 AATCAACAGCTAGAGACACTCACTTGGGTGGAGAAGACTTTGATAA 1518341 >seq323 Length=1674160 Score = 123 bits (136), Expect = 1e-22 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || || || || |||||||||||||| ||||||| || || ||||| |||| Sbjct 474080 ATGCTGTGATCACAGTCCCTGCTTATTTCAATGACTCACAACGACAGGCTACTAAGGATG 474139 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || || |||| ||||||| |||||| | ||||||||||||||||| ||||| | Sbjct 474140 CTGGCCAGATATCTGGGCTAAATGTACTTCGAGTGATTAATGAACCTACAGCTGCTGCCC 474199 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGA 451467 | || ||||| || | ||||| |||| Sbjct 474200 TGGCCTATGGTCTGGACAAATCTGAAGA 474227 >seq1280 Length=456034 Score = 100 bits (110), Expect = 1e-15 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 127419 ATATGCTTCCGAAATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTT 127478 |||||| || | || |||||| ||||||||||| ||||| | |||||| | | |||| || Sbjct 409220 ATATGCCTCAGCAACTTCTTTGAATTTTTGTTCTGCTTCCTCTTTGTTTTCTGGATTTTT 409161 Query 127479 ATCAGGATGATGTTTAACAGCTAATTTACGGTAAGCTTTTTTAATTTC 127526 ||||||||| ||||| || | ||||||||||||| ||||||| || Sbjct 409160 ATCAGGATGCCATTTAAGTGCCACTTTACGGTAAGCTCTTTTAATGTC 409113 >seq2912 Length=120370 Score = 87.8 bits (96), Expect = 7e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | || || || | || ||||| ||||| || || | |||| | || Sbjct 71505 ATGCAGATTTTCATGAAGACCCTTATGGGGAAAACCATTACACTCGAGGATGAACCCTCG 71446 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| ||| | | || || || || ||||||||||||||||||||||| ||| Sbjct 71445 GACACCATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAA 71386 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | |||| |||| ||||||| | |||||| | || || || Sbjct 71385 CAGAGGCTGATATTTGCCGGGACGTAACTGGAAGATGACCGTACTTTGTCTGACTACAAC 71326 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || ||||| | || |||||| | || || |||| Sbjct 71325 ATCCTAAAGGAGTCCACTCTTCACCTTGTGTTGCGACT 71288 >seq1529 Length=356124 Score = 87.8 bits (96), Expect = 7e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || ||||| ||||||||||| || || |||||||| Sbjct 305564 GTTACCCATGCAGTTGTTACTGTGCCGGCTTACTTCAATGATGCCCAGCGCCAAGCAACC 305623 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| || |||||||| | ||||| | || || || ||||| || Sbjct 305624 AAAGATGCTGGCACCATTGCTGGACTGAATGTCATGCGGATCATCAATGAGCC 305676 Score = 86.0 bits (94), Expect = 2e-11 Identities = 88/113 (78%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGAA 451252 || || || |||||||| || | ||||| |||| ||||| ||||| || |||||| Sbjct 304957 AAACCATACATTCAAGTTGATATTGGAGGTGGGCAAACCAAAACATTTGCCCCAGAAGAA 305016 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGG 451305 ||||| | |||||||| ||||||||||||||||| || ||| |||| |||| Sbjct 305017 ATTTCTGCCATGGTTCTCACTAAAATGAAAGAAACTGCTGAAGCATAT-TTGG 305068 >seq302 Length=1732574 Score = 86.0 bits (94), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || ||||| || | | || |||||| | || Sbjct 218269 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCATGATCGAAGTTGAACCCTCA 218328 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 218329 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 218388 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || ||||| |||||||| | ||||| ||||| || Sbjct 218389 CAGAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGCTGTACTTT----GATTACAAC 218444 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | ||||| | || ||||| | || || ||||| Sbjct 218445 ATCCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 218482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1972955338060416