Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq40 149 1e-30 seq97588 141 2e-28 seq1071 114 3e-20 seq130 113 1e-19 seq59 109 1e-18 seq2912 107 4e-18 seq306 105 1e-17 seq370 100 6e-16 seq762 96.9 8e-15 seq9 91.5 3e-13 seq263 84.2 5e-11 >seq40 Length=4171579 Score = 149 bits (164), Expect = 1e-30 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || |||||||| | |||||| | |||||||| Sbjct 2179816 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2179757 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || ||||| || || ||||| ||||| || || Sbjct 2179756 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 2179697 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| || || |||||||| ||| ||||| || ||||| | ||| Sbjct 2179696 ATCTTGGCCTTGACATTTTCGATGGTGTC---ACTGGGCTCCACCTCTAGGGTGATGGTC 2179640 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || ||||| | |||||||| Sbjct 2179639 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTT 2179606 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || |||||||| | |||||| | |||||||| Sbjct 2180044 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2179985 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || ||||| || || ||||| || || || || Sbjct 2179984 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 2179925 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| |||||| || ||||| | ||| Sbjct 2179924 ATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGTTCCACCTCTAGGGTGATGGTC 2179868 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 2179867 TTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 2179836 >seq97588 Length=222 Score = 141 bits (156), Expect = 2e-28 Identities = 154/203 (76%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || |||||||| | |||||| | |||||||| Sbjct 20 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 79 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || ||||| || || ||||| || || || || Sbjct 80 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 139 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| |||||| || ||||| | ||| Sbjct 140 ATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGTTCCACCTCTAGGGTGATGGTC 196 Query 195109 TTTCCTGTCAAAGTTTTTACGAA 195131 || || |||| || || ||||| Sbjct 197 TTGCCGGTCAGGGTCTTCACGAA 219 >seq1071 Length=588399 Score = 114 bits (126), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || |||||||| |||| | || | |||||||| Sbjct 405912 ACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGACTGGGTGCAGCCATCTTCC 405971 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || || ||||| || ||||| || Sbjct 405972 AGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 406031 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| |||||| ||||||||||||| ||| || || || ||| | | || Sbjct 406032 ATCTTTGCCTTGACACTCTCAATGGTGTC---ACTGGGCTCGACCTCTAGGTTGATGATC 406088 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || || ||||| | ||| | |||||| Sbjct 406089 TTACCAGTTAAGGTTTTCAGGAAGATCTGCATT 406121 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | |||||||| | | || ||||| |||| || || | |||||||| Sbjct 405686 ACCAGGTGCCGGGTGGACTCCT---GGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 405742 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA-ATGCCTTCTTTGTCTTG 195050 ||||||||||| || ||||| || | | ||||| || || ||||| || ||||| | Sbjct 405743 AGCTGCTTACCGGCAAAGATTAGCCTCAGCTGGTCAGGGGGGTATGCCCTCCTTGTCCTA 405802 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| |||||| ||||||||||||||| || || || ||||| | ||||| Sbjct 405803 GATCTTTGCCTTGACATTCTCAATGGTGTCCCTGGGCTCGACCTCCAGGGTGATGGTCTT 405862 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 405863 ACCGGTCAGGGTCTTCACAAAGATCTGCAT 405892 >seq130 Length=2658597 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||||||||| || || |||||||| | || || | ||||| || Sbjct 942299 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCAGCCATCCTCC 942240 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || |||| || ||||| | ||||||||||| || ||||| Sbjct 942239 AGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATCTTGG 942180 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| || || ||||| || | ||| Sbjct 942179 ATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTC 942123 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 942122 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 942091 >seq59 Length=3472997 Score = 109 bits (120), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||||||||| || || ||||| || | || || ||||| || Sbjct 2114009 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGGGGCCATCCTCC 2114068 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || |||| |||||||| || ||||||||||| || ||||| Sbjct 2114069 AGCTGCTTGCCGGCAAATATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCCTTATCTTGG 2114128 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || |||||| ||||| ||||||| | | | || || ||||| || | |||| Sbjct 2114129 ATCTTGGCCTTGACATTCTCGATGGTGTGACTGGGC--TCGACCTCAAGAGTGATGGTCT 2114186 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||| || || || || | ||||| Sbjct 2114187 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2114217 >seq2912 Length=120370 Score = 107 bits (118), Expect = 4e-18 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| |||||||||||||||||||| ||| | || ||||| || | | ||| | Sbjct 71288 AGTCGCAACACAAGGTGAAGAGTGGACTCCTTTAGGATGTTGTAGTCAGACAAAGTACGG 71347 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| || | | | || || || || || | |||||||| |||||||| ||||| Sbjct 71348 TCATCTTCCAGTTACGTCCCGGCAAATATCAGCCTCTGTTGGTCAGGAGGAATTCCTTCC 71407 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || ||||||||||| ||| | || || ||| Sbjct 71408 TTATCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCGAGGGTTCATCCTCGAGTGTA 71467 Query 195103 ACCGTCTTTCC 195113 | || ||||| Sbjct 71468 ATGGT-TTTCC 71477 >seq306 Length=1726031 Score = 105 bits (116), Expect = 1e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | |||||||| |||| || ||||| || | || || | ||||| || Sbjct 299812 ACCAGGTGCAAGGTGGACTCATTTTATATGTTGTAGTCTGACAGGGTGCGTCCATCCTCC 299753 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || || || |||| || |||| || ||||||||||| || ||||| Sbjct 299752 AGCTGCTTACCGGCAAATATCAGTCTCTGCTGGTTAGGTGGAATGCCTTCCTTATCTTGG 299693 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| || ||||| ||| || || |||| || | ||| Sbjct 299692 ATCTTGGTCTTGACATTCTCGATAGTGTC---ACTGGGCTCTACCTCAAAAGTGATGGTC 299636 Query 195109 TTTCCTGTCAAAGTTTTTACGAA 195131 || ||||||| ||||| || || Sbjct 299635 TTGCCTGTCAGGGTTTTCACAAA 299613 >seq370 Length=1552371 Score = 100 bits (110), Expect = 6e-16 Identities = 152/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| |||| || || || ||||| || | || || | |||||||| Sbjct 218102 ACCAGGTGCAGGGTGCACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 218043 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA-ATGCCTTCTTTGTCTTG 195050 |||||||| || || ||| | || | || | ||| || || ||||| || ||||| || Sbjct 218042 AGCTGCTTGCCAGCAAAGTTCAGCCTCTGCTTGTCAGGGGGTGATGCCCTCCTTGTCCTG 217983 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || ||| ||| || |||||||||||||| ||| || || || | ||| | || Sbjct 217982 GATCTTTGCCTTTACATTCTCAATGGTGTC---ACTGGGCTCGACCTCTAAGGTGATGGT 217926 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || || || ||||| ||||| | |||||| Sbjct 217925 CTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 217892 >seq762 Length=850339 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||||||||| | || |||| || | || || | | ||| || Sbjct 760313 ACCAGGTGCAAGGTGGACTCTTTCTAGATGGTGTAGTCTGACAGGGTGCAACGATCCTCC 760372 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || |||| || ||||| || |||||||||| || ||||| Sbjct 760373 AGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGGTAGAATGCCTTCCTTATCTTGG 760432 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||||||||||| |||| || || ||||| || | ||| Sbjct 760433 ATCTTGGCCTTCACATTCTCAATGGTGT---AACTGGGCTCAACCTCAAGAGTGATGGTC 760489 Query 195109 TTTCCTGTCAAAGTTTTTACGAA 195131 || ||||||| || || || || Sbjct 760490 TTGCCTGTCAGGGTCTTCACAAA 760512 >seq9 Length=5865362 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| || || ||||| || | || | ||||| || |||||||| || Sbjct 1315851 GTGGACTCTTTCTGGATGTTGTAGTCTGACAGGATGTGGCCATCCTCCAGCTGCTTGCCG 1315910 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || |||| || ||||| || ||||||||||| || ||||| || || |||| Sbjct 1315911 GCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCTTGGATCTTGGCCTTG 1315970 Query 195064 ACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 | |||| |||||| | ||| || || ||||| || | |||||||| |||| Sbjct 1315971 GCATTCTTGATGGTGCC---ACTGGGCTCGACCTCAAGAGTGATGGTCTTTCCCGTCATG 1316027 Query 195121 GTTTTTACGAACACTTGCAT 195140 || || || || | ||||| Sbjct 1316028 GTCTTCACAAAGATCTGCAT 1316047 >seq263 Length=1906157 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| || || ||||| || | || || | || || || |||||||| || Sbjct 1272591 GTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 1272532 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || |||| || |||| | |||||||||| || ||||| || || |||| Sbjct 1272531 GCAAATATCAGTCTCTGCCGGTCAGATAGAATGCCTTCCTTATCTTGGATCTTGGCCTTG 1272472 Query 195064 ACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAG 195121 | ||||| ||||||| | | ||| || ||||| || ||||| ||||||| | Sbjct 1272471 GCATTCTCTATGGTGTCACTGGGCTT--GACCTCAAGAGTGGTGGTCTTGCCTGTCAGGG 1272414 Query 195122 TTTTTACGAACACTTGCAT 195140 | || || || | ||||| Sbjct 1272413 TCTTCACAAAGATCTGCAT 1272395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107929978887584