Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9 111 1e-19 seq1045 109 4e-19 seq130 105 4e-18 seq59 105 4e-18 seq1071 102 5e-17 seq383 93.3 3e-14 seq306 93.3 3e-14 seq263 84.2 1e-11 >seq9 Length=5865362 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| ||||| ||||| || ||| | | |||| ||| Sbjct 1315839 ACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGATGTGGCCATCCTCC 1315898 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||||||||| |||| |||||||| | || | || ||||| || Sbjct 1315899 AGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCTTGG 1315958 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||| | || || || | ||| || ||| || || | || ||||| | Sbjct 1315959 ATCTTGGCCTTG--GCATTCTTGATGGTGCCACTGGGCTCGACCTCAAGAGTGATGGTCT 1316016 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||||| | |||||||||||||||||||| || Sbjct 1316017 TTCCCGTCATGGTCTTCACAAAGATCTGCATGTT 1316050 >seq1045 Length=604390 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| || |||| |||||||| || |||||||| Sbjct 14378 TCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 14437 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||||| ||||| || Sbjct 14438 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGAC--AT 14495 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || || ||||||| Sbjct 14496 TCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCA 14555 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 14556 CAAAGATCTGCAT 14568 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 14588 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 14647 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || | | |||||||| | || | ||||||||||| Sbjct 14648 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 14707 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 14708 ATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCT 14765 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||||||||||||||| Sbjct 14766 TGCCTGTCAGGGTCTTCACAAAGATCTGCAT 14796 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| || |||| |||||||| || |||||||| Sbjct 13694 TCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 13753 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||| ||||| || Sbjct 13754 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCCATGCCTTGAC--AT 13811 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| |||||||| || || || ||||||| Sbjct 13812 TCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTGCCTGTCAGGGTCTTCA 13871 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 13872 CAAAGATCTGCAT 13884 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| || |||| |||||||| || |||||||| Sbjct 13922 TCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 13981 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||| ||||| || Sbjct 13982 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCCATGCCTTGAC--AT 14039 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| |||||||| || || || ||||||| Sbjct 14040 TCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTGCCTGTCAGGGTCTTCA 14099 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 14100 CAAAGATCTGCAT 14112 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| || |||| |||||||| || |||||||| Sbjct 14150 TCCTTCTGGATGTTGTAGTCGGACAGGGGGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 14209 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||| ||||| || Sbjct 14210 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCCATGCCTTGAC--AT 14267 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| |||||||| || || || ||||||| Sbjct 14268 TCTCGATGGTGTCACGGGGCTCGACCTCCAGGGTGATGGTTTTGCCTGTCAGGGTCTTCA 14327 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 14328 CAAAGATCTGCAT 14340 >seq130 Length=2658597 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| || || || ||| | | |||| ||| Sbjct 942299 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCAGCCATCCTCC 942240 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||||||||| |||| |||||||| || | || ||||| || Sbjct 942239 AGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATCTTGG 942180 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | || ||||| | Sbjct 942179 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCT 942122 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | ||||| || |||||||||||||||||||| || Sbjct 942121 TGCCCGTCAGGGTCTTCACAAAGATCTGCATGTT 942088 >seq59 Length=3472997 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | | |||| ||| Sbjct 2114009 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGGGGCCATCCTCC 2114068 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||||||||| |||| || ||||| | || | || ||||| || Sbjct 2114069 AGCTGCTTGCCGGCAAATATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCCTTATCTTGG 2114128 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | | || || ||| || || | || ||||| | Sbjct 2114129 ATCTTGGCCTTGAC--ATTCTCGATGGTGTGACTGGGCTCGACCTCAAGAGTGATGGTCT 2114186 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | ||||| || |||||||||||||||||||| || Sbjct 2114187 TGCCCGTCAGGGTCTTCACAAAGATCTGCATGTT 2114220 >seq1071 Length=588399 Score = 102 bits (112), Expect = 5e-17 Identities = 140/190 (74%), Gaps = 7/190 (4%) Strand=Plus/Plus Query 34796 CTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAG 34855 ||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| ||||| Sbjct 405706 CTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAGATTAG 405765 Query 34856 TCGTTGCTGGTCTTGCGGC-ACCCCCTCCTTGTCGCTA-ATCTTCTGTTTGACGGATGCT 34913 | ||||||| | || | ||||||||||| ||| ||||| ||||| || || Sbjct 405766 CCTCAGCTGGTCAGGGGGGTATGCCCTCCTTGTC-CTAGATCTTTGCCTTGAC--ATTCT 405822 Query 34914 --ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 || | || | || ||| || || | ||| ||||| || || || || |||||||||| Sbjct 405823 CAATGGTGTCCCTGGGCTCGACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAA 405882 Query 34972 AGATCTGCAT 34981 |||||||||| Sbjct 405883 AGATCTGCAT 405892 >seq383 Length=1523528 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/216 (70%), Gaps = 11/216 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||||||| ||||| ||||| || ||| | | |||| ||| Sbjct 887556 ACCAGGTGCAAAGTGTACTCTTTCTAGATGTTGTAGTCTGACAGGGTGTGGCCATCCTCC 887615 Query 34833 AGCTGTTTTCCGGCAAATA------TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 ||||| || |||||||||| | |||| |||||||| | || ||||| ||||| Sbjct 887616 AGCTGCTTGCCGGCAAATACAAATATCAGTCTCTGCTGGTCAGGTGGGACCCCTTCCTTA 887675 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTA 34944 || ||||| ||||| || || || | ||||||| ||||| || | || | Sbjct 887676 TCTTGGATCTTAGTCTTGAC--ATTCTCGATGGTGTCACCGGA-TCAACCTCAAGAGTGA 887732 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCA 34980 |||| || || | || ||||||||||||||||||| Sbjct 887733 TGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGCA 887768 >seq306 Length=1726031 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 34800 ATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGT 34859 ||||| ||||| || ||| | ||| |||| |||||||| || ||||||||||| |||| Sbjct 299785 ATGTTGTAGTCTGACAGGGTGCGTCCATCCTCCAGCTGCTTACCGGCAAATATCAGTCTC 299726 Query 34860 TGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCG 34917 ||||||| | || | || ||||| || ||||| ||||| || || || | Sbjct 299725 TGCTGGTTAGGTGGAATGCCTTCCTTATCTTGGATCTTGGTCTTGAC--ATTCTCGATAG 299668 Query 34918 ATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCT 34977 |||| || ||| || || | || ||||| || || || || || ||||||||| ||| Sbjct 299667 TGTCACTGGGCTCTACCTCAAAAGTGATGGTCTTGCCTGTCAGGGTTTTCACAAAGCTCT 299608 Query 34978 GCATATT 34984 |||| || Sbjct 299607 GCATGTT 299601 >seq263 Length=1906157 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || | || |||||||| || ||||||||| Sbjct 1272585 TCTTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAT 1272526 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||| |||| | | || ||||| || ||||| ||| | Sbjct 1272525 ATCAGTCTCTGCCGGTCAGATAGAATGCCTTCCTTATCTTGGATCTTGGCCTTGGCATTC 1272466 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | |||| || || || || | || |||| || || || || ||||||||| Sbjct 1272465 TCTATGGTGTCACTGGGCTTGACCTCAAGAGTGGTGGTCTTGCCTGTCAGGGTCTTCACA 1272406 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 1272405 AAGATCTGCATGTT 1272392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324201743168256