Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10632 102 9e-17 seq1179 102 9e-17 seq1138 96.9 4e-15 seq474 84.2 2e-11 >seq10632 Length=3166 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || |||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 1720 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 1661 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 1660 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1601 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 1600 TTTCTTACACCATA 1587 >seq1179 Length=509559 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || |||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 478446 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 478387 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 478386 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 478327 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 478326 TTTCTTACACCATA 478313 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 482006 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 481947 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | || || || ||||| || || |||||||| ||||||||||| | | | | | Sbjct 481946 TTAATGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGGACAGTCT 481887 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 |||| | || ||||| || || ||||| | ||| || | ||| || |||| Sbjct 481886 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGGA 481836 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| |||||| ||||||| ||||| || | || || Sbjct 466875 GTCCCAGCATTGAACAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 466816 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||||||| ||| ||| ||||| || || || || | ||| || | ||| ||| Sbjct 466815 TATGTTTCAATTGCAGCATCGATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 466756 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| || ||||||||| Sbjct 466755 ATATGCTGTGGTCTTTCA 466738 >seq1138 Length=537340 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTC---ATTACTCCCAT 18668 ||| || || ||||||| | ||||||||||||| | |||||| || || ||||| Sbjct 330849 TTAGAAGTCCGCATCCAAGGTAAAAGAATTCTCTG---TTGAATTCGACATCACCCCCAT 330905 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | |||||||| | |||| || |||||||| || || ||||| |||| ||| || Sbjct 330906 CCTCTGATATTCCCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATGTT 330965 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATT 18758 |||||| || ||||||||||||| ||| || Sbjct 330966 TTCCATGAAGTCAAATGGATTTTCTACTTT 330995 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | ||||| ||||| || | || ||||||||||| | || | Sbjct 332743 CCTCGTCTCTGCTAATGAGCTCATTGGAAAAGGTGAGGCCGGGCATCAGTCCCCGCTTCT 332802 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||| ||||| || || || || || ||||| | Sbjct 332803 TGAGCCAGAATATTGATGCAAAAGAACCAGAGAAGAAGATCCCCTCCACGGCAGCAAAGG 332862 Query 19103 CAAC 19106 | || Sbjct 332863 CCAC 332866 >seq474 Length=1313924 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 ||||||| || || |||| || || ||||| || | || ||||| || ||||| || | Sbjct 1049862 CCTCGTCCCTGCTGATCAGCTCGTTTGAAAACGTGAGTCCTGGCATGAGGCCTCTCTTCT 1049921 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||||| |||||| || ||||| ||||| |||||| | || || || | Sbjct 1049922 TCAGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAACCGCCTTCTCCGGCGGCGAAGG 1049981 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| || || Sbjct 1049982 CCACCACTCTCTCACC 1049997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561341858753280