Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq204 102 1e-16 seq802 82.4 1e-10 >seq204 Length=2127363 Score = 102 bits (112), Expect = 1e-16 Identities = 168/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 2228 CAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGA 2287 |||||| | || || | | ||||| ||| |||||||||||| ||||||||| || || Sbjct 456374 CAATCATACTCGCCTATTTGAGAATGGGACCTGCGAGATCCACCTGACCTGTATTGCGGA 456433 Query 2288 GGATCCCAATGACAACA-TCTCCTTCAAATGGGAGGCCTTGGGCAAGA-CGCTTCTACGC 2345 | |||| ||| | |||| |||| | ||| | ||| || | | | ||| || | Sbjct 456434 GAATCCAAATCA-AACAGTCTCAGTTGGGTGGAGGACCTCAGGAAGCATCTCTT-TAGGG 456491 Query 2346 GAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGC 2405 || || || ||||| |||||||||||| | ||| || ||| |||| ||||| ||| Sbjct 456492 GAACCAAATCTCACTGTCTCCTGGGACCCGAAGAATTCCAATGACCAGAGTTACACCTGC 456551 Query 2406 ATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTCGGCCCAGAAGCTGTGT 2462 || || || ||||| |||||||| ||| || | ||||| ||||||| || ||| Sbjct 456552 CAAGCTGAGAATGCTGTCAGCAATCTGTCTGTCTCTGTCTCTGCCCAGAGTCTTTGT 456608 >seq802 Length=807673 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||| || |||| ||| || || | |||| Sbjct 293016 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGGAGGCACCACCACAGCT 292957 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || |||||||| || || | || || | | |||| | || || Sbjct 292956 GCCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTCCACCAGCTCCATGTCCTGG 292897 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || |||| ||| || | | ||| || | | || ||||| || || || |||| Sbjct 292896 GTCTGGTCTTTTCCATCCCTCTGCCAGGTCAGGGTGATCTCAGCTGGGTAGAATCCCAGG 292837 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 292836 GCCCAGCACC 292827 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||| || |||| ||| || || | |||| Sbjct 314244 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGGAGGCACCACCACAGCT 314185 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || | |||||||| || || | || || ||| ||| | || || Sbjct 314184 GCCCACTTCTGGAAGCTTCCATCTCCTGCAGGCCTGGTGTCCATCACCTCCATGTCCTGG 314125 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || |||||||| || | | ||| || | | || ||||| || || || |||| Sbjct 314124 GTCTGGTCTTCTCCATCCCTCTGCCAGGTCAGGGTGATCTCAGCTGGGTAGAATCCCAGG 314065 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 314064 GCCCAGCACC 314055 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| | || | ||||||||||| ||| |||||||||||||| || Sbjct 773732 GGTAACCCTTCATGGTTCACATGGCATGTGTATCTCAGCTCCTCTCCAGAAGGGACCACC 773673 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || |||||||| || || | || ||| | ||||| | Sbjct 773672 ACAGCTGCCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTCTCCCAGCTCTATG 773613 Query 14292 TCTTG 14296 || || Sbjct 773612 TCCTG 773608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628424606001920