Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq786 260 1e-64 seq2476 109 4e-19 seq863 82.4 6e-11 >seq786 Length=828056 Score = 260 bits (288), Expect = 1e-64 Identities = 436/624 (70%), Gaps = 5/624 (1%) Strand=Plus/Minus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 |||| |||| ||| || || | || |||||| | |||| || || | |||| ||| | Sbjct 610673 TGGGGAAGG-TCTTGGTTCTCGCTGAAGCTGAATTCTCAGTGGCTCGATATGATTCAGAT 610615 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | | || | ||||| || |||||||| || || || | || || |||| ||| | Sbjct 610614 AAATACGTGCATTTCCCAAAGTATGGACAAAATCACCTGGCTTCAGGCCTGTGATGTGTG 610555 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | |||||| | || || || | || | ||| ||||| ||||| || || || ||||| | Sbjct 610554 CAATCATGGAGGTAAGCAGGGCATAACAGGCAATGTTGAAGGGCACACCCAGGCCCATAT 610495 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 | || ||||||||||| || || || || ||||| || | ||| || || ||||| | Sbjct 610494 CTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACCACATAGAATTGACAGA 610435 Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30064 || ||||| ||||| | ||||| ||| | |||||| ||||||||||| || | | Sbjct 610434 GGGCATGGCAAGGAGGCATTGCCATCAGGGGAAGGTCTTTTGGGTTCCAGGCACATATGG 610375 Query 30065 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30124 | | ||||| || |||||| | ||||| ||| | | ||||||||||| || | Sbjct 610374 TTAATATTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTA 610315 Query 30125 CCCCCATCCCCGAGTAGTCTG-CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30183 | || |||||||| |||| ||| |||| |||| |||||||| ||||| |||||| Sbjct 610314 CTCCTTGGCCCGAGTAATCTGAATCTC-TGTCTTTGTAGTCTGCTCCAAAATGTCTCCAC 610256 Query 30184 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTC 30242 | ||| || || ||||| |||||||| | || | | ||| ||| ||| |||| Sbjct 610255 TAGAAACCATAAACCGGGCCCAGGTCCCATTCCTGTC-ATGCAGAGAATCCCAGGCTGTC 610197 Query 30243 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 30302 | |||| ||| ||| || ||||| ||||| || | || |||| ||| || | || Sbjct 610196 CGAAAAATCTAGGGACCCATTGGCATCCCATATTCTCACTCCCTCGGAGGACAGTTGCTT 610137 Query 30303 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30362 |||||||| ||| ||| |||||||||| ||| || | || ||||||| || || Sbjct 610136 ACCATTTGTGGAGCCTTTGATAAACCACAGCAACTCTTCAAAAACTCCCTTCCAGAACAC 610077 Query 30363 CCTCTTGGTCGTGAGGAGGGGAAA 30386 | ||||| ||||| || ||||| Sbjct 610076 TCATTTGGTTGTGAGCAGAGGAAA 610053 >seq2476 Length=158986 Score = 109 bits (120), Expect = 4e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| || || || | |||||||| ||||| ||||| Sbjct 45749 AGGCCCGTGATGTGTGCTATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 45690 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||| || || ||||||||||| || || || || ||||| || | | Sbjct 45689 ACACCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTTCC 45630 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 || || || ||||| | || ||||| ||||| || ||||| ||| Sbjct 45629 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 45585 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| ||||| ||||||||||| || || || || |||||||| Sbjct 43729 CATATCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 43670 Query 30210 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 || || | | | || ||| ||| |||||||||| |||| ||| || ||||| | Sbjct 43669 CCCTTCCTGTC-GAGCAGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCAT 43611 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| || | || ||||| ||| || ||||| | |||||||| || Sbjct 43610 CCCATATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGAGCC 43562 >seq863 Length=755488 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || ||||| || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 485713 TTGAGCTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 485772 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || || | ||||| ||||||| |||||| || ||| Sbjct 485773 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGGTTCTGTTTACCT 485820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408074020092896