Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq130 107 2e-18 seq306 102 6e-17 seq59 102 6e-17 seq9 86.0 5e-12 >seq130 Length=2658597 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || ||||| || || |||||||| | | || | | |||| |||| ||||| || Sbjct 942288 GGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCAGCCATCCTCCAGCTGCTTGCC 942229 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 |||||||||| | ||| || || | ||||||||||| |||||||| || || || Sbjct 942228 GGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATCTTGGATCTTGGCCTT 942169 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||| | || | |||||| | || || |||||||||| || ||||| || | || Sbjct 942168 GACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGT 942109 Query 101452 TTTTACAAATATCTGCATG 101470 || ||||| ||||||||| Sbjct 942108 CTTCACAAAGATCTGCATG 942090 >seq306 Length=1726031 Score = 102 bits (112), Expect = 6e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || || |||| ||| ||||| || | | || | |||| |||| |||||||| Sbjct 299801 GGTGGACTCATTTTATATGTTGTAGTCTGACAGGGTGCGTCCATCCTCCAGCTGCTTACC 299742 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 |||||||||| | ||| || | || ||||||||||| |||||||| || || || Sbjct 299741 GGCAAATATCAGTCTCTGCTGGTTAGGTGGAATGCCTTCCTTATCTTGGATCTTGGTCTT 299682 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||| | || | ||||||| | || || |||| ||||| || ||||| || | || Sbjct 299681 GACATTCTCGATAGTGTCACTGGGCTCTACCTCAAAAGTGATGGTCTTGCCTGTCAGGGT 299622 Query 101452 TTTTACAAATATCTGCATG 101470 ||| ||||| |||||||| Sbjct 299621 TTTCACAAAGCTCTGCATG 299603 >seq59 Length=3472997 Score = 102 bits (112), Expect = 6e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || ||||| || || ||||| || | | || | |||| |||| ||||| || Sbjct 2114020 GGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGGGGCCATCCTCCAGCTGCTTGCC 2114079 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 |||||||||| | |||||| || || ||||||||||| |||||||| || || || Sbjct 2114080 GGCAAATATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCCTTATCTTGGATCTTGGCCTT 2114139 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||| | || | |||| | | || || |||||||||| || ||||| || | || Sbjct 2114140 GACATTCTCGATGGTGTGACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGT 2114199 Query 101452 TTTTACAAATATCTGCATG 101470 || ||||| ||||||||| Sbjct 2114200 CTTCACAAAGATCTGCATG 2114218 >seq9 Length=5865362 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC-ATCGTC 101319 || || || | ||| || ||||| || || ||||| || | | | | |||| ||| || Sbjct 1315839 ACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCTGACAG-GATGTGGCCATCCTC 1315897 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || ||||| || |||||||||| | ||| || || || ||||||||||| |||||||| Sbjct 1315898 CAGCTGCTTGCCGGCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCTTG 1315957 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || || || | | | ||| || | || || |||||||||| || || Sbjct 1315958 GATCTTGGCCTTGGCATTCTTGATGGTGCCACTGGGCTCGACCTCAAGAGTGATGGTCTT 1316017 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || ||||| ||||||||| Sbjct 1316018 TCCCGTCATGGTCTTCACAAAGATCTGCATG 1316048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395751234807264