Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq40 96.9 3e-15 seq97588 95.1 9e-15 seq1045 84.2 2e-11 >seq40 Length=4171579 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || ||| |||||| || || ||||||||||| Sbjct 2180063 GCCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 2180004 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| |||||||| || |||||||| || || | ||| Sbjct 2180003 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGG 2179944 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||| || ||||| || ||| | | | || | ||||| Sbjct 2179943 GATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCAC 2179884 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || || |||| || || || ||||||||||| Sbjct 2179883 CTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 2179836 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || ||| |||||| || || ||||||||||| Sbjct 2179835 GCCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 2179776 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| |||||||| || |||||||| || || | ||| Sbjct 2179775 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGG 2179716 Query 48659 AACGCCCTCCTTGTC 48673 | |||||| || || Sbjct 2179715 GATGCCCTCTTTATC 2179701 >seq97588 Length=222 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || ||| |||||| || || ||||||||||| Sbjct 1 GCCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 60 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| |||||||| || |||||||| || || | ||| Sbjct 61 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGG 120 Query 48659 AACGCCCTCCTTGTC 48673 | ||||||||| || Sbjct 121 GATGCCCTCCTTATC 135 >seq1045 Length=604390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||| || || ||| ||| || || || ||||| || || Sbjct 14570 CCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 14629 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| |||||||| |||| | ||| || || | ||| Sbjct 14630 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 14689 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || ||| | | | || | ||| ||| Sbjct 14690 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 14749 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGT 48773 |||| || || || || || |||| || || ||||| |||||||| || ||| Sbjct 14750 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATTGTCTGT 14803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380430842520096