Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq88 165 1e-35 >seq88 Length=2985627 Score = 165 bits (182), Expect = 1e-35 Identities = 224/310 (72%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 153702 AGTTGAAGTGGTAACACAGGATGTAAATTCATCA-CTTCGATCGCCCGCGTCCCTCAGAT 153760 ||| |||||||| || ||||||| ||| | | || | | || || ||| | | | Sbjct 770944 AGTGGAAGTGGTGACCCAGGATG-AAAGAAAGCTGCTGCACACACCTGCATCCTTACGGT 771002 Query 153761 GCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAG 153820 | || ||||| | || ||||| || ||||| || ||||| || |||||||||||| Sbjct 771003 GTTCTCTGAAACAATCCCAGGAACCATTGATTGTGACATGGCAGAAAAAGAAAGCTGTAA 771062 Query 153821 GTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATA 153880 | |||||||| |||| ||| ||||||||| |||| || | || | ||||| |||||| Sbjct 771063 GCCCAGAAAACATGGTCACTTATAGCAAAACCCATGGGCTTGTAGTCCAGCCTGCATATA 771122 Query 153881 AAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATG 153940 ||| || |||| || || || | || || | |||| || || || || ||||| Sbjct 771123 GAGACAGGGTTAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACA 771182 Query 153941 CAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGG 154000 |||||||||| ||||| ||||| || |||||||| || |||| ||| | |||||| ||| Sbjct 771183 CAACACTGGACGATGAGGGCTGCTACATGTGTCTCTTCAATACGTTTGTTTCTGGGAAGA 771242 Query 154001 TATCGGGAAC 154010 | || ||||| Sbjct 771243 TCTCAGGAAC 771252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 648413296171520