Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1443 297 2e-75 seq1232 116 4e-21 seq3 104 3e-17 >seq1443 Length=385661 Score = 297 bits (328), Expect = 2e-75 Identities = 664/987 (67%), Gaps = 15/987 (2%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || |||||| || ||| || ||||| || Sbjct 89993 CAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACATCCATGTCAAACTTATTAGC 89934 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||| | ||||| || | || |||||| || ||| || | ||||| || || || Sbjct 89933 GAAAAAGTGGTGT---TTACGAAGCATCCAGCTCAAGTCACCAGCTCCGAAAACACACAC 89877 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || ||| |||| || ||||| |||| ||| || ||||| ||||| Sbjct 89876 TGAGCGCACGTGGACCCCGCTGCATGGTGGGTAAGGAGCGCCTCCCGAAACGTCGCCTTC 89817 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| |||||||| || | || | |||||| || ||| ||||| | Sbjct 89816 AAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTCAGACAAGTCATATTTATG 89757 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | |||||| | ||| || || || || || | || | |||||||| || | | Sbjct 89756 GCTTGAGGGGAGAGA-ACCAGGGACTCCAGGGATCCTTTGGACAGTGGCCCAGAGATACT 89698 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGC- 160409 | || |||||||| ||||||| | ||| |||||||||| || ||| | | | | Sbjct 89697 CATCTGGGCTGTATGTGTCCTGTGCCCACTCCATGAACTTTCGGAT-ATCTTCATTTTCT 89639 Query 160410 AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG- 160468 || || | || || || | || || ||||| || ||||| || || | || Sbjct 89638 AGCACATAGCCTACATATTCCCTACTGACTACGAAGTAGGCACTGCCTGAAAAAAGAGGA 89579 Query 160469 --TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACC 160526 | || || |||| | || |||| | || ||||| | || | ||| ||| | Sbjct 89578 GTTTTGAGTGGAGGCTGTGT---TTTGGCTACCCCAGTGTTTGTCAGCT-TCCCGTCAAC 89523 Query 160527 AGC-GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585 | | | | ||| || ||||| || | ||||| | | ||||| || || || || Sbjct 89522 AACTGTATATCGTTTTTTCCATCTCTCTTCCTTGTTCTGAGGCATCTTCTCAGTTTCCAG 89463 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 |||| |||| || || || |||| | |||| || |||||||| || |||| || Sbjct 89462 GTTGTTTTCACCCAAGAATGACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTGATAGG 89403 Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705 || || |||| || | || |||| ||||||||| | | |||| || |||||| Sbjct 89402 GAAATCCATACCACAAAGATTGATCAAGTACTTCCAGCTTTCACTCATCCTGTACAGGTC 89343 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 | |||| || || | || |||||||| || ||||| || || || || || ||||| || Sbjct 89342 CTTCATACAGTTGAGGTCAGCCTGCACCCGACTCCAAGATGCATAAACAACATTCTCCAG 89283 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAA 160825 | |||||||| ||||||||| | || || || | || |||| |||||| || || Sbjct 89282 CTGGCTGGCCACGAAGACGTTACCAAAGCAGGATGCAATGCCCATCACCGCGGCTAAAAA 89223 Query 160826 CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGC 160885 || || || ||| ||||||||| | ||| || | ||||||||| |||||||| Sbjct 89222 GGGCTCCTCGGCTTTTTTGTCCACGTGGATGCAGTAGAAATTCTGAGGCATATAGATGGC 89163 Query 160886 CCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGG 160945 ||| |||| ||| || | ||| || ||||| || || | ||| || || || || || || Sbjct 89162 CCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGGTGAACCACTATGGAATACGCAATTGG 89103 Query 160946 AAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATA 161005 ||| || ||| || || |||| | | | || || ||| | |||| ||| | Sbjct 89102 AAAGTCTACCTCTTCTTTGCTGAGGGGCTCTACAATATATTTGCGCAACCTGATGAAAGA 89043 Query 161006 ATCACAATCCCGCGTCATGTTGATATA 161032 |||| || || |||||||| ||||| Sbjct 89042 GGCACAGTCACGGGTCATGTTTATATA 89016 >seq1232 Length=480003 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| | | |||| || |||| |||||| | ||||| || |||| | | | Sbjct 442274 AGATATTTTGCCAACTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCCGCT 442215 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| ||||| ||||| | ||| | ||||| | | || Sbjct 442214 GGAATATAATTCTCATAGTTTTCCCTGGATGGTCCCAGAACAACAGGTACTGAGCCAGCC 442155 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 || |||| ||||| |||||| | |||||| || ||||||||||||||||||||| Sbjct 442154 AAAAATGCATTGTAGAGCTTTTCGGTGATGTAATCTTTGTGAATTGAGTTTTCAAAAGAA 442095 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 442094 AGATAAAATTTACA 442081 >seq3 Length=6666273 Score = 104 bits (114), Expect = 3e-17 Identities = 233/343 (68%), Gaps = 9/343 (3%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| || |||| ||| || | ||| || | | || | || || | | ||| || | Sbjct 6282874 TGTGACGTAGATATTCTTCTAAACACTGAAGGACGTTATCATCCACCTTTGGGTCAAACT 6282815 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || ||||| || |||||| || | |||||||| ||| || |||||| | | Sbjct 6282814 TGTTGGCCAAGAGATGATG---GTTCTGAAGTAGCCAGTGCAGGTCCCCAGACCCGTAGA 6282758 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||| | || ||| ||||| |||||| | ||| | || || | | | | || Sbjct 6282757 TACAGACAGCCCGCTGGTGGACGCCTGAGCAAGGGGTGTAAGGCGCCCCATCCTCAATGT 6282698 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || |||| | ||||||||| | | ||| || || | | |||||| ||| ||| Sbjct 6282697 CCCCCTCGTGGCCCTGCCACTTGATTAGCCTTGCAATAGACGTCATGTCTGAGAGGTCAA 6282638 Query 160285 ATTTGTACAT-CAGGGGAACGGCACCGGGAACGC-CG-GGCATACGCTGTAGGGTGGCCC 160341 ||||| ||| || |||| | | || || | | || |||| ||||| |||||||||| Sbjct 6282637 ATTTGG-CATGCAAGGGAGCTGATCCAGGCATCCACGAGGCA--CGCTGGAGGGTGGCCC 6282581 Query 160342 ACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 | ||||| || || || || || ||||| || |||||| || Sbjct 6282580 AAAGGTGCTCATCAGGACTATAGGTGTCTTTTACCCATTCAAT 6282538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576431642123520