Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2912 105 1e-17 seq420 102 2e-16 seq302 100 6e-16 seq1824 95.1 2e-14 >seq2912 Length=120370 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| || || || | || | ||| | ||| ||||| ||| || || |||| Sbjct 71278 ACCACCACGAAGTCGCAACACAAGGTGAAGAGTGGACTCCTTTAG-GATGTTGTAGTCAG 71336 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || ||||| |||| || | || ||||| || | |||||||| ||||| | Sbjct 71337 ACAAAGTACGGTCATCTTCCAGTTACGTCCCGGCAAATATCAGCCTCTGTTGGTCAGGAG 71396 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | || || | ||| Sbjct 71397 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCGAGGGTTCAT 71456 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || ||||||||||| || | | || || || || |||||||| || Sbjct 71457 CCTCGAGTGTAATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCATCTT 71508 >seq420 Length=1427458 Score = 102 bits (112), Expect = 2e-16 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 192301 TTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTA 192360 ||| || |||||| | ||| | || || | ||| | || | ||| || ||| || Sbjct 1349659 TTATTAGCACCACCACAAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTG 1349718 Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 || ||||| || || | |||| |||| ||| |||||||||||||| | ||||| | Sbjct 1349719 TAGTCAGACAAAGTATGGCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCCGG 1349778 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 ||||| || |||||||| |||| || || || |||||||| ||||| || || Sbjct 1349779 TCAGGGGGAATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAG 1349838 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | ||| || || | || |||||||| || || | || || || || |||||||| || Sbjct 1349839 GGTTCAACCTCGATCGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCATCTT 1349897 >seq302 Length=1732574 Score = 100 bits (110), Expect = 6e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| |||||||||||||| | ||||| || ||||| || |||||||| | Sbjct 218425 CATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCT 218366 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || || || |||||||| ||||| ||||| | ||| ||||| | | | Sbjct 218365 TATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGATCATGA 218306 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||||| || || | || || | || |||||||| || Sbjct 218305 TGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATCTT 218266 >seq1824 Length=278459 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| ||||||||||||| | ||||||||| ||||| || |||||||| | Sbjct 167026 CATCTTCCAGTTGCTTACCAGCAAAGACCAGTCTCTGTTGGTCAGGAGGAATTCCTTCCT 167085 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 ||| || || || |||||||| ||||| || || | ||| || || || || | Sbjct 167086 TATTCTGCATCTTGGCCTTTACATTTTCTATAGTGTCAGAGGGTTCAACCTCGAGCGTGA 167145 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||||| || || | || || | || |||||||| || Sbjct 167146 CGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCATCTT 167185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983103194875200