Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2912 111 3e-19 seq302 105 1e-17 seq420 102 1e-16 seq1824 100 5e-16 >seq2912 Length=120370 Score = 111 bits (122), Expect = 3e-19 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTC-TTTAGAAATATT 171892 ||| || |||||| | |||||| || || | || | ||| | ||| ||||| | | || Sbjct 71270 TTCTTAGCACCACCACGAAGTCGCAACACAAGGTGAAGAGTGGACTCCTTTAGGA-TGTT 71328 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || || || |||| || | || ||||| || | |||||||| Sbjct 71329 GTAGTCAGACAAAGTACGGTCATCTTCCAGTTACGTCCCGGCAAATATCAGCCTCTGTTG 71388 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||||| || |||||||| ||||| || || || |||||||| ||| || || || Sbjct 71389 GTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCGA 71448 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || ||||||||||| || | | || || ||||| |||||||| || Sbjct 71449 GGGTTCATCCTCGAGTGTAATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCATCTT 71508 >seq302 Length=1732574 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||| ||||||||||| || | ||||| |||||||| || |||||||| ||| Sbjct 218423 TCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTA 218364 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || |||||||| |||||| ||||| | ||| ||||| | | ||| Sbjct 218363 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGATCATGATG 218304 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || || | || || | ||| |||||||| || Sbjct 218303 GTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATCTT 218266 >seq420 Length=1427458 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | ||| | || | ||| || || || || || || Sbjct 1349667 ACCACCACAAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 1349726 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| | | || |||| ||| ||||||||||| || | ||||| ||||||| || Sbjct 1349727 CAAAGTATGGCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCCGGTCAGGGGG 1349786 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| |||| || || || |||||||| |||||| || || | ||| || Sbjct 1349787 AATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 1349846 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || | || |||||||| || || | || || ||||| |||||||| || Sbjct 1349847 CTCGATCGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCATCTT 1349897 >seq1824 Length=278459 Score = 100 bits (110), Expect = 5e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||| ||||||||||| | | ||||||||||||||| || |||||||| ||| Sbjct 167028 TCTTCCAGTTGCTTACCAGCAAAGACCAGTCTCTGTTGGTCAGGAGGAATTCCTTCCTTA 167087 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 | || || || |||||||| |||||| || || | ||| || || || || | | Sbjct 167088 TTCTGCATCTTGGCCTTTACATTTTCTATAGTGTCAGAGGGTTCAACCTCGAGCGTGACG 167147 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || || | || || | ||| |||||||| || Sbjct 167148 GTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCATCTT 167185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903901032441600