Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1045 107 2e-18 seq130 100 3e-16 seq306 95.1 1e-14 seq59 95.1 1e-14 seq40 93.3 4e-14 seq1071 87.8 2e-12 seq370 87.8 2e-12 seq9 82.4 7e-11 >seq1045 Length=604390 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || || || || || || || || || || || || Sbjct 14799 ACAATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCC 14740 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||| ||||| || || || || || || Sbjct 14739 AGTGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 14680 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||||||| || |||||||| ||| | | | |||| || || Sbjct 14679 CAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 14620 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || ||||| || || || ||| |||| Sbjct 14619 AACATCCAGAAGGAGTCCACCCTGCACCTGGT 14588 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 14569 GATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 14510 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||| ||||| || || || || || || || Sbjct 14509 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 14450 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | |||| || || || Sbjct 14449 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAA 14390 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 14389 CATCCAGAAGGAGTCTACCCTGCACCTGGT 14360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || ||||| || || || || || || || Sbjct 13885 GATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCG 13826 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || | |||||| ||||| || || || || || || || Sbjct 13825 TGACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 13766 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | |||| || || || Sbjct 13765 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAA 13706 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 13705 CATCCAGAAGGAGTCTACCCTGCACCTGGT 13676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || ||||| || || || || || || || Sbjct 14113 GATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCG 14054 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || | |||||| ||||| || || || || || || || Sbjct 14053 TGACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 13994 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | |||| || || || Sbjct 13993 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAA 13934 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 13933 CATCCAGAAGGAGTCTACCCTGCACCTGGT 13904 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || ||||| || || || || || || || Sbjct 14341 GATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTCGAGCCCCG 14282 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || | |||||| ||||| || || || || || || || Sbjct 14281 TGACACCATCGAGAATGTCAAGGCATGGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 14222 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | |||| || || || Sbjct 14221 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCCCCCTGTCCGACTACAA 14162 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 14161 CATCCAGAAGGAGTCTACCCTGCACCTGGT 14132 >seq130 Length=2658597 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 942091 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 942150 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| || ||||| || || | || || Sbjct 942151 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCATCTGACCAG 942210 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| |||||||| || |||||||||||| | | | |||||||||| ||| Sbjct 942211 CAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCTGCACCCTGTCAGATTACAAC 942270 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || || || | ||| ||||| Sbjct 942271 ATCCAGAAAGAGTCCACCTTGCACCTGGTG 942300 >seq306 Length=1726031 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||| |||| | ||||| || || || || || || || | || ||||| ||| Sbjct 299604 ATGCAGAGCTTTGTGAAAACCCTGACAGGCAAGACCATCACTTTTGAGGTAGAGCCCAGT 299663 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| || ||||| || || || | || Sbjct 299664 GACACTATCGAGAATGTCAAGACCAAGATCCAAGATAAGGAAGGCATTCCACCTAACCAG 299723 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| |||||||| || |||||||||||| | | | ||||||| || ||| Sbjct 299724 CAGAGACTGATATTTGCCGGTAAGCAGCTGGAGGATGGACGCACCCTGTCAGACTACAAC 299783 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || |||| || || || | ||| ||||| Sbjct 299784 ATATAAAATGAGTCCACCTTGCACCTGGTG 299813 >seq59 Length=3472997 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 2114217 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 2114158 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || ||||||||||| || ||||| || || || || ||| Sbjct 2114157 CACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCACCTGACCAA 2114098 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| |||||||| || |||||||||||| | | ||||||| || ||| Sbjct 2114097 CAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCCCACCCTGTCAGACTACAAC 2114038 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || || || | ||| ||||| Sbjct 2114037 ATCCAGAAAGAGTCCACCTTGCACCTGGTG 2114008 >seq40 Length=4171579 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || || || || || ||| Sbjct 2179608 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 2179667 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || ||||| || || || ||||| || Sbjct 2179668 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAG 2179727 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||||||||| || |||||||| ||| | | | || ||||| ||| Sbjct 2179728 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2179787 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || || || || ||| |||| Sbjct 2179788 ATCCAGAAAGAGTCCACCCTGCACCTGGT 2179816 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| || || || || || || || ||| ||| Sbjct 2179836 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGT 2179895 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || || ||||| || Sbjct 2179896 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 2179955 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||||||||| || |||||||| ||| | | | || ||||| ||| Sbjct 2179956 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2180015 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || || || || ||| |||| Sbjct 2180016 ATCCAGAAAGAGTCCACCCTGCACCTGGT 2180044 >seq1071 Length=588399 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || |||||||| || || || || || || || ||| Sbjct 405893 GATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 405834 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC-GATC 24821 ||||| | || | || || ||||||| | ||||| || || ||||| ||| || | Sbjct 405833 GGACACCATTGAGAATGTCAAGGCAAAGATCTAGGACAAGGAGGGCATACCCCCCTGACC 405774 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | | | | ||||||||||| || |||||||| ||| | | | |||| || || | Sbjct 405773 AGCTGAGGCTAATCTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 405714 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||| | |||| || || | ||| |||| Sbjct 405713 ACATCC---AGGAGTCCACCCGGCACCTGGT 405686 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| |||| ||||| | || | || || || || || Sbjct 406123 ACAATGCAGATCTTCCTGAAAACCTTAACTGGTAAGATCATCAACCTAGAGGTCGAGCCC 406064 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||| ||||| || || || || || || Sbjct 406063 AGTGACACCATTGAGAGTGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 406004 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||| ||| | | | ||| || || Sbjct 406003 CAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCTGCACCCAGTCCGACTAC 405944 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || ||||| || || || ||| |||| Sbjct 405943 AATATCCAGAAGGAGTCCACCCTGCACCTGGT 405912 >seq370 Length=1552371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | ||||| |||| ||||| || || || | || || || || Sbjct 217890 ACAATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCC 217949 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAAT-ACCTCCCGA 24819 | ||||| | || | ||||| ||||||||| ||||| || || || ||| || || Sbjct 217950 AGTGACACCATTGAGAATGTAAAGGCAAAGATCCAGGACAAGGAGGGCATCACCCCCTGA 218009 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 | || | ||| |||||| || || |||||||| ||| | | | |||| || || Sbjct 218010 CAAGCAGAGGCTGAACTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 218069 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || ||||| | || || ||| |||| Sbjct 218070 CAACATCCAGAAGGAGTGCACCCTGCACCTGGT 218102 >seq9 Length=5865362 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || || || || ||| Sbjct 1316047 ATGCAGATCTTTGTGAAGACCATGACGGGAAAGACCATCACTCTTGAGGTCGAGCCCAGT 1315988 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 | ||| | | | | || ||||||||||| || ||||| || || || || || Sbjct 1315987 GGCACCATCAAGAATGCCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCACCTGACCAG 1315928 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| |||||||| || |||||||||||| | | ||||||| || ||| Sbjct 1315927 CAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCACATCCTGTCAGACTACAAC 1315868 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || || || || || | ||||||||| Sbjct 1315867 ATCCAGAAAGAGTCCACCTTGCACTTGGTG 1315838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449283759714560