Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq306 89.7 4e-13 >seq306 Length=1726031 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 107552 TAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGC 107611 ||| ||||| | ||||| ||||| | |||||||| ||||| || | || ||| | Sbjct 299600 TAACATGCAGAGCTTTGTGAAAACCCTGACAGGCAAGACCATCACTTTTGAGGTAGAGCC 299659 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | || ||| ||| | || || ||||| ||||| |||||| | || | Sbjct 299660 CAGTGACACTATCGAGAATGTCAAGACCAAGATCCAAGATAAGGAAGGCATTCCACCTAA 299719 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 ||||||||||| || | ||| ||||| ||||||||||| | || || | ||||| Sbjct 299720 CCAGCAGAGACTGATATTTGCCGGTAAGCAGCTGGAGGATGGACGCACCCTGTCAGACTA 299779 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||| ||||| || |||||| ||||| Sbjct 299780 CAACATATAAAATGAGTCCACCTTGCACCTGGTG 299813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398346178181728