Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq302 82.4 7e-11 >seq302 Length=1732574 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || | ||||| || || || ||||| ||||||||| ||| || | || Sbjct 218477 CAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAA----TCAAAGTACAGCCATC 218422 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| ||||| ||||||||| ||||||| | ||||| || ||||| || ||||| || || Sbjct 218421 TTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATC 218362 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 || || |||| | ||| | ||||||| |||||| ||||| | | | || Sbjct 218361 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACTTCGATCATGATGGT 218302 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || | || || ||||| || ||||| Sbjct 218301 TTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 218269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487877430566400