Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1443 197 2e-45 >seq1443 Length=385661 Score = 197 bits (218), Expect = 2e-45 Identities = 645/998 (65%), Gaps = 17/998 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || ||| ||| Sbjct 90009 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACATCCA 89950 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || ||||| | ||| || || | ||||| | | || || | Sbjct 89949 TGTCAAACTTATTAGCGAAAAAGTGGTGT---TTACGAAGCATCCAGCTCAAGTCACCAG 89893 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || ||||| || |||||||| || |||||||| || || || | || || Sbjct 89892 CTCCGAAAACACACACTGAGCGCACGTGGACCCCGCTGCATGGTGGGTAAGGAGCGCCTC 89833 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| |||||||| || ||||||| || ||| | |||||| | Sbjct 89832 CCGAAACGTCGCCTTCAAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTCAG 89773 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||| || || | ||| || | | ||||| || || || | || || | || Sbjct 89772 ACAAGTCATATTTATGGCTTGAGGGGAGAGAACCAGGGACTCCAGGGATCCTTTGGACAG 89713 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || || || |||| | |||||||||||||| | || Sbjct 89712 TGGCCCAGAGATACTCATCTGGGCTGTATGTGTCCTGTGCCCACTCCATGAACTTTCGGA 89653 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 || || | ||| | || || || ||| | || | ||||| || || | Sbjct 89652 TATCTTCATTTTCTAGCACATAGCCTACATATTCCCTACTGACTACGAAGTAGGCACTGC 89593 Query 162479 CAGAAAACACGGG---TATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535 | ||||| | || | || || ||||| | |||| || || ||||| | Sbjct 89592 CTGAAAAAAGAGGAGTTTTGAGT---GGAGGCTGTGTTTTGGCTACCCCAGTGTTTGTCA 89536 Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA--GACGG 162593 | | || || || || | || || |||| || |||| || || || | Sbjct 89535 GCTTCCCGTCAACAACTGTATATCGTTTTTTCCATCTC----TCTTCCTTGTTCTGAGGC 89480 Query 162594 GTGTTCG--GTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCT 162651 | ||| || || || |||| |||| || | ||| |||| | || || ||| Sbjct 89479 ATCTTCTCAGTTTCCAGGTTGTTTTCACCCAAGAATGACTTGAGCTTCCTGACAATTTCT 89420 Query 162652 AGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACG 162711 || ||||| || | || || || | || || ||||| || | || ||||| | | Sbjct 89419 AGGTTGGTTTTGATAGGGAAATCCATACCACAAAGATTGATCAAGTACTTCCAGCTTTCA 89360 Query 162712 CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCG 162771 || | | |||||| |||| | |||||| || || ||||| || |||||||| || || Sbjct 89359 CTCATCCTGTACAGGTCCTTCATACAGTTGAGGTCAGCCTGCACCCGACTCCAAGATGCA 89300 Query 162772 TACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCC 162831 || || || |||||| | |||| || ||||| || | || || || | || ||| Sbjct 89299 TAAACAACATTCTCCAGCTGGCTGGCCACGAAGACGTTACCAAAGCAGGATGCAATGCCC 89240 Query 162832 ATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 ||||| || | | || | || ||||| | || ||||| | |||||| | |||| Sbjct 89239 ATCACCGCGGCTAAAAAGGGCTCCTCGGCTTTTTTGTCCACGTGGATGCAGTAGAAATTC 89180 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| |||||||||||||| | || || | ||| || ||||| ||||| ||||| Sbjct 89179 TGAGGCATATAGATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGGTGAACCACT 89120 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011 || |||||||| || || || || |||| || ||||| | | || || || ||| Sbjct 89119 ATGGAATACGCAATTGGAAAGTCTACCTCTTCTTTGCTGAGGGGCTCTACAATATATTTG 89060 Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 || ||| | || | |||||||| |||||||| Sbjct 89059 CGCAACCTGATGAAAGAGGCACAGTCACGGGTCATGTT 89022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577642787379200