Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1045 89.7 3e-13 >seq1045 Length=604390 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | |||| || || ||| ||| || || |||||||| ||||| Sbjct 14570 CCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 14629 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| ||||| | |||||| || | || Sbjct 14630 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 14689 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | |||| || | |||||| || | || || Sbjct 14690 ATGCCCTCCTTGTCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 14748 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || || ||||| | || || |||||||||||||| || Sbjct 14749 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATTGT 14799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328266728355840