Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq302 114 3e-20 seq1824 109 1e-18 seq2912 93.3 1e-13 seq40 93.3 1e-13 seq97588 89.7 1e-12 seq130 89.7 1e-12 seq420 86.0 1e-11 >seq302 Length=1732574 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| |||| | ||||| ||| || ||||| | ||| Sbjct 218284 AAGACCCTTACGGGGAAAACCATCATGATCGAAGTTGAACCCTCAGACACTATAGAAAAT 218343 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| || || || ||||| Sbjct 218344 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAGAGGCTGATCTTT 218403 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||||| | |||||| |||||||| |||| || ||||| Sbjct 218404 GCTGGTAAGCAACTGGAAGATGGCTGTACTTTG----ATTACAACATCCAAAAGGAGTCC 218459 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||||| ||||||||||| Sbjct 218460 ACCCTTCATCTTGTGTTGAGACTTCG 218485 >seq1824 Length=278459 Score = 109 bits (120), Expect = 1e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||||||| |||| | || || ||| |||||||| | ||| Sbjct 167167 AAGACCCTTACAGGAAAAACCGTCACGCTCGAGGTTGAACCCTCTGACACTATAGAAAAT 167108 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || | || ||||||||| || ||| || ||||| |||| Sbjct 167107 GTAAAGGCCAAGATGCAGAATAAGGAAGGAATTCCTCCTGACCAACAGAGACTGGTCTTT 167048 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||||| ||||| || |||||| |||| || ||||| Sbjct 167047 GCTGGTAAGCAACTGGAAGATGGCCATACTTT----GACTACAACATCCAAAAGGAGTCC 166992 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||||| ||||||||||| Sbjct 166991 ACCCTTCATCTTGTGTTGAGACTTCG 166966 >seq2912 Length=120370 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 206227 TCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGAC 206286 || ||||| | ||| |||||| ||||| || || || ||||||||| || ||| Sbjct 71448 TCGGACACCATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 71389 Query 206287 GCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTAC 206346 || || || || || ||||| | | | ||||||||| | |||||| | || ||| Sbjct 71388 CAACAGAGGCTGATATTTGCCGGGACGTAACTGGAAGATGACCGTACTTTGTCTGACTAC 71329 Query 206347 AACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| ||| || ||||| |||||||||||||| ||| ||||||| Sbjct 71328 AACATCCTAAAGGAGTCCACTCTTCACCTTGTGTTGCGACTTCG 71285 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| ||| |||||||||||||| ||||| || ||| || ||||||| |||||| Sbjct 71285 CGAAGTCGCAACACAAGGTGAAGAGTGGACTCCTTTAGGATGTTGTAGTCAGACAAAGTA 71344 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||| | | | ||||| || || |||| ||||| Sbjct 71345 CGGTCATCTTCCAGTTACGTCCCGGCAAATATCAGCCTCTGTTG 71388 >seq40 Length=4171579 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| |||||| ||||| Sbjct 2179623 AAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGTGACACCATCGAAAAT 2179682 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| || || || ||| || |||| ||||| Sbjct 2179683 GTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAGCAGCGACTCATCTTT 2179742 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 2179743 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCC 2179802 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 2179803 ACCCTGCACCTGGT 2179816 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || |||||| |||||| |||| Sbjct 2179851 AAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGTGACACCATCGAGAAT 2179910 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || |||| ||||| Sbjct 2179911 GTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAGCGACTCATCTTT 2179970 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 2179971 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCC 2180030 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 2180031 ACCCTGCACCTGGT 2180044 >seq97588 Length=222 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || |||||| |||||| |||| Sbjct 213 AAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGTGACACCATCGAGAAT 154 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || |||| ||||| Sbjct 153 GTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAGCGACTCATCTTT 94 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 93 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCC 34 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 33 ACCCTGCACCTGGT 20 >seq130 Length=2658597 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTG 206220 ||||| ||| ||||| ||| || || || || || || || |||||| | || || Sbjct 942085 GCTAACATG---CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTC 942141 Query 206221 GAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280 || |||||| |||| || ||| ||||| ||||| || ||||| ||| Sbjct 942142 GAGCCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCA 942201 Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340 | ||| || ||||| || || ||||| |||||| |||| ||||| | || || | Sbjct 942202 TCTGACCAGCAGAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCTGCACCCTGTCA 942261 Query 206341 GATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||| ||||||||||||| || | ||||| || Sbjct 942262 GATTACAACATCCAGAAAGAGTCCACCTTGCACCTGGT 942299 >seq420 Length=1427458 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813 ||||||||| ||||| ||||| || ||||| || |||| || ||||||| |||||| Sbjct 1349676 AAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATG 1349735 Query 204814 TCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCC 204848 ||||||||||| ||||| || || ||||| |||| Sbjct 1349736 GCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCC 1349770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180168011792992