Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq786 226 3e-54 seq88 179 4e-40 seq2476 136 5e-27 seq259 123 3e-23 seq838 96.9 4e-15 >seq786 Length=828056 Score = 226 bits (250), Expect = 3e-54 Identities = 436/636 (69%), Gaps = 8/636 (1%) Strand=Plus/Minus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCA 146929 || |||||||| ||| | |||| || | || || ||||||||| |||| ||||| | Sbjct 610684 ATTTTGAGCTTTGGGGAAGGTCTTGGTT--CTCGCTGAAGCTGAATTCTCAGTGGCTCGA 610627 Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989 || || || || | | || | |||| || || ||||| || || ||||| |||| Sbjct 610626 TATGATTCAGATAAATACGTGCATTTCCCAAAGTATGGACAAAATCACCTGGCTTCAGGC 610567 Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049 | || | ||| || | |||| |||| ||||| | || | ||| ||||||||||| || | Sbjct 610566 CTGTGATGTGTGCAATCATGGAGGTAAGCAGGGCATAACAGGCAATGTTGAAGGGCACAC 610507 Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGT 147109 |||||||||| || || ||||||||||| || ||||| || |||||||| | |||| | Sbjct 610506 CCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACCACAT 610447 Query 147110 AAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCC 147169 | || || || ||| ||||| || |||| ||||| ||| ||||| ||||||| Sbjct 610446 AGAATTGACAGAGGGCATGGCAAGGAGGCATTGCCATCAGGGGAAGGTCTTTTGGGTTCC 610387 Query 147170 AGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACC 147229 |||| | | | ||| || ||||| | || || || || || Sbjct 610386 AGGCACATATGGTTAATATTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTT 610327 Query 147230 TCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAA 147289 ||||||||| || || |||||| ||| | || | | ||| ||| || |||| Sbjct 610326 GCAGCTGGTCTACTCCTTGGCCCGAGTAATCTGAATCTCTGTCTTTGTAGTCTGCTCCAA 610267 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC-GAGAAG 147348 | || ||||||| ||| || || || || |||||||| | || || ||| ||||| Sbjct 610266 AATGTCTCCACTAGAAACCATAAACCGGGCCCAGGTCCCATTCCTGTC-ATGCAGAGAAT 610208 Query 147349 CCC-GCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGC 147407 ||| | | | || ||| || ||||||| | ||| ||||| || | |||||||| || Sbjct 610207 CCCAGGCTGTCCGA-AAAATCTAGGGACCCATTGGCATCCCATATTCTCACTCCCTCGGA 610149 Query 147408 GGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCC 147467 ||| || | |||| | |||||||| ||| ||||| |||| ||| || ||||| || Sbjct 610148 GGACAGTTGCTTACCATTTGTGGAGCCTTTGATAAACCACAGCAACTCTTCAAAAACTCC 610089 Query 147468 CCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAA 147503 | |||| || || | ||||| || ||||| || || Sbjct 610088 CTTCCAGAACACTCATTTGGTTGTGAGCAGAGGAAA 610053 >seq88 Length=2985627 Score = 179 bits (198), Expect = 4e-40 Identities = 230/317 (73%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || ||||||| |||| || || ||| | || || ||| Sbjct 770951 GTGGTGACCCAGGATGAAAGAAAGCTGCTGCACACACCTGCATCCTTACGGTGTTCTCTG 771010 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | || ||||| ||||||| || |||||||||| || | | ||||| Sbjct 771011 AAACAATCCCAGGAACCATTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAA 771070 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | |||| ||||||| ||| ||| | || |||||||| || |||| |||| | Sbjct 771071 AACATGGTCACTTATAGCAAAACCCATGGGCTTGTAGTCCAGCCTGCATATAGAGACAGG 771130 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 | |||||||| |||| |||||| ||| ||| |||||| || ||||| || || | Sbjct 771131 GTTAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACACAACACTG 771190 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||| ||||||| || ||||| || || |||| |||||||| ||||| || Sbjct 771191 GACGATGAGGGCTGCTACATGTGTCTCTTCAATACGTTTGTTTCTGGGAAGATCTCAGGA 771250 Query 171372 GTGGCCTGCCTCACCCT 171388 |||||||||||||| Sbjct 771251 ACAGCCTGCCTCACCCT 771267 Score = 163 bits (180), Expect = 3e-35 Identities = 183/245 (75%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || || | |||||| |||||||| ||||| ||||| Sbjct 772973 GTACAGCCCATAGTATTCCTTCACTACAACTATTTTGAAGACCACCTAAACATAACCTGC 773032 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | ||||||||| | ||| ||| |||||| |||| ||| |||||| Sbjct 773033 TCTGCGACTGCCCGCCCAGCCCCTGCCATTGCCTGGAAGGGCACGGGTACAGGAATTGAG 773092 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| |||| || | |||||| ||||| || || ||||| |||||| | |||| | Sbjct 773093 AATAGTACCGAGAGTCACTTCCATTCAAATGGGACCACATCTGTCACCAGTATCCTCCGA 773152 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || |||||||||||||||||| | || ||||| || |||||||| || ||||||| Sbjct 773153 GTCAAAGACCCCAAGAGTCAGATTGGGAAGGAAGTGATCTGCCAGGTTATATACCTGGGG 773212 Query 171633 AATGT 171637 | ||| Sbjct 773213 ACTGT 773217 >seq2476 Length=158986 Score = 136 bits (150), Expect = 5e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||| ||||| | |||||||| |||||||| Sbjct 45753 CTTCAGGCCCGTGATGTGTGCTATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAA 45694 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||||||||| || || ||||||||||| || ||||| || |||||||| | Sbjct 45693 GGGCACACCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATT 45634 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || || || || ||| ||||| || ||||| ||||| Sbjct 45633 TTCCACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 45589 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| || ||||||||||| || || ||||| |||||||| || || || | || Sbjct 43713 GCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTC-GAGC 43655 Query 147343 -GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | | ||| || ||||||| | ||| ||||| || | |||||| Sbjct 43654 AGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCATCCCATATTCTCACTCC 43595 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGG 147438 ||||| ||| || || |||| | ||||||||| || Sbjct 43594 CTTGGAGGACAGTTCTTTAGCATTTGTGGAGCCCTGG 43558 >seq259 Length=1927424 Score = 123 bits (136), Expect = 3e-23 Identities = 126/167 (75%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| |||| ||||| ||||| ||||||||| ||| || |||| Sbjct 1895391 AGGGTTACTTGGGTTGCCAAACCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 1895332 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || ||||| || || ||||||||| | |||| Sbjct 1895331 TGCCCCAGGCAGAGAACCA------------TGGCCCAGAAATCAAGGAGCATTTGAACT 1895284 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 ||||||| || ||||| |||||||| || | ||||| ||| ||| Sbjct 1895283 CTCTGGGAGAGAAGCTGAAGACCCTCAGGAGGCAGCTGCAGCGCTGT 1895237 >seq838 Length=778964 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| | | ||||||| ||||||| | || || ||||| Sbjct 605958 GTACTCCCTGGTGTTCATCATTGGAGTGACAGGCAATGTCCTGGTGGTTCTGGTGCTCAT 605899 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||| |||||| | |||||||| ||||| ||| |||||||||||| | ||| Sbjct 605898 GCAGTACAGGAGGCTTCAAAGCATGACCAGCATCTACCTATTCAACCTGGCCATCTCTGA 605839 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | ||||||| | || || |||||| ||| Sbjct 605838 TCTGGTCTTCCTTTTCACTTTGCCTTTCTGGATTGACT 605801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 198/294 (67%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || | ||||| |||| | | ||||||| Sbjct 655944 GTACTCCCTGGTGTTCATCATTGGCCTCCTGGGCAACATGGTGGTTGTGTTGATCCTCAT 656003 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||| || |||| || ||||| || |||| |||| ||||| |||| || ||| Sbjct 656004 AAAGTACAGGAAGCTCCAAATTATGACTAATATCTACCTGCTCAACTTGGCAATTTCTGA 656063 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | |||||| | || || |||||||||| | | |||| || Sbjct 656064 CCTGCTCTTTCTCTTCACCGTTCCATTCTGGATTCACT--ATGTTATGTGGAA----TGA 656117 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | ||| ||||||||||| | | | || ||| || | || |||| Sbjct 656118 ATGGGGTTTTGGCCATCACATGTGTAAACTAGTCATTGGGTTTTATTACCTTGCCTTGTA 656177 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 ||| || || | || ||||||||| |||| | |||||||| || || |||| Sbjct 656178 CAGTGAGATCTTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGCCATTGT 656231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582691888972800