Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq40 105 7e-18 seq1045 96.9 3e-15 seq420 89.7 5e-13 seq370 86.0 6e-12 seq2912 84.2 2e-11 seq1824 84.2 2e-11 >seq40 Length=4171579 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| || || || |||||||| || | Sbjct 2179834 CCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAA 2179775 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| ||||| || | |||||||| ||||| || Sbjct 2179774 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 2179715 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || || ||||| || | ||||| | ||||| Sbjct 2179714 ATGCCCTCTTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCCACC 2179655 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| | || || ||||| |||||||||||| Sbjct 2179654 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 2179604 >seq1045 Length=604390 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||||| ||||| || |||||||||||| Sbjct 14570 CCACCCCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 14629 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| ||||| | |||||| || || || Sbjct 14630 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 14689 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || ||| ||||| || | ||||| | || || Sbjct 14690 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 14749 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || || || | || || || || || |||||| Sbjct 14750 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATT 14797 >seq420 Length=1427458 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||| ||||||||||| | ||| || || Sbjct 1349677 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAA-AGTATG 1349735 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || || || ||||| |||| | |||| | || || || || ||||| Sbjct 1349736 GCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCCGGTCAGGGGGAATTCCTTC 1349795 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || | || || || || || || | ||||| || | ||| || |||| || Sbjct 1349796 CTTATTCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGATCGT 1349855 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 |||||||| || || | || || | |||||| ||||| ||| Sbjct 1349856 GATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCATCTTG 1349898 >seq370 Length=1552371 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || ||| | ||||| || ||||||||||| Sbjct 218120 CCACCCCTGAGGCGGACGACCAGGTGCAGGGTGCACTCCTTCTGGATGTTGTAGTCAGAC 218061 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| ||| | ||||| || || ||| Sbjct 218060 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGTTCAGCCTCTGCTTGTCAGGGGGT 218001 Query 134607 -ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || || || ||| || || || | ||||| | || || Sbjct 218000 GATGCCCTCCTTGTCCTGGATCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCGAC 217941 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || ||||| ||||| ||||| ||||| ||||| || |||||| Sbjct 217940 CTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 217892 >seq2912 Length=120370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 ||||||||||| ||||| || ||||| |||||| | ||||||||||| | ||| || | Sbjct 71288 AGTCGCAACACAAGGTGAAGAGTGGACTCCTTTAGGATGTTGTAGTCAGACAA-AGTACG 71346 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || | | || ||||| |||| | ||| || || || || || ||||| Sbjct 71347 GTCATCTTCCAGTTACGTCCCGGCAAATATCAGCCTCTGTTGGTCAGGAGGAATTCCTTC 71406 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||||| || | ||| | ||||| || Sbjct 71407 CTTATCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCGAGGGTTCATCCTCGAGTGT 71466 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||||||| || | | || || | |||||| ||||| ||| Sbjct 71467 AATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCATCTTG 71509 >seq1824 Length=278459 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/222 (68%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||| |||||| || || || ||||| |||||||| ||||||||||| | || || Sbjct 166969 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTC----AAAGTATGG 167024 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || || || || ||||| | || | ||| || || || || || ||||| Sbjct 167025 CCATCTTCCAGTTGCTTACCAGCAAAGACCAGTCTCTGTTGGTCAGGAGGAATTCCTTCC 167084 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || | || || || || || || | ||||| || | ||| || ||||| || Sbjct 167085 TTATTCTGCATCTTGGCCTTTACATTTTCTATAGTGTCAGAGGGTTCAACCTCGAGCGTG 167144 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | |||||| || || | || || |||||||| ||||| ||| Sbjct 167145 ACGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCATCTTG 167186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504708834423040