Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10632 123 3e-23 seq1179 123 3e-23 seq275 102 1e-16 >seq10632 Length=3166 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 1720 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 1661 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 1660 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 1601 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 1600 TTTCTTACACCAT 1588 >seq1179 Length=509559 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 478446 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 478387 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 478386 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 478327 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 478326 TTTCTTACACCAT 478314 Score = 116 bits (128), Expect = 5e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| |||||||| || |||||| ||| | || || || ||||| || | Sbjct 482006 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 481947 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || ||||||||||||||||| ||||| || || ||||| || | | | ||| Sbjct 481946 TTAATGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGGACAGTCT 481887 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 |||||| |||||||| | ||||||| | | || || | ||||| || Sbjct 481886 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGG 481838 Score = 102 bits (112), Expect = 1e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || |||||||||| | Sbjct 462143 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGACACAGCAATCCTGGCTGCTAAGA 462084 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | ||||| | || || ||| | || ||||| | ||||| | Sbjct 462083 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 462024 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 70507 ||| | || || || || |||| || ||||| || |||||||||| |||| Sbjct 462023 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCATGGTGATTT 461970 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | |||||||| || ||||| ||||| || ||||||||||| ||| Sbjct 466875 GTCCCAGCATTGAACAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 466816 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||||||| || | || ||||| | ||||| || | | || | ||||||| Sbjct 466815 TATGTTTCAATTGCAGCATCGATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 466756 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 466755 ATATGCTGTGGTCTTTC 466739 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| Sbjct 472226 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 472167 Query 69577 CA 69578 || Sbjct 472166 CA 472165 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||| ||||| || ||||| ||||||||||| || | |||||||| | || || | | Sbjct 471855 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGT 471796 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| ||||| || | || || ||||| | || || | ||||| || Sbjct 471795 TCTTCCTTTCCTGTGTTTTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 471736 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 471735 TCCAGGTAAATAGC 471722 >seq275 Length=1849296 Score = 102 bits (112), Expect = 1e-16 Identities = 238/350 (68%), Gaps = 13/350 (4%) Strand=Plus/Minus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACCATCTAGAGAT 37395 ||| ||| ||| || || || || ||| ||||| ||| | ||| |||| | | | Sbjct 1496930 TTAATTCTTTCCAGTGGAGCCGAAACCTCCTGAGCCCCTTTCAGTGT--CATCCATTGTT 1496873 Query 37396 TGTACTTCAT-TCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 37454 | ||||| | | || |||| |||| | || |||| | | || ||||| || |||| ||| Sbjct 1496872 TCAACTTCTTCTAAGTTCAG-ATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATC 1496814 Query 37455 GCCCGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCC 37514 || | ||||||| ||| || ||||||| || ||| || |||| |||||| Sbjct 1496813 ACCTTTTTTTATTTCAAACTTCTCTTTTCCAAAGTTAGACAGCCCAACACCAACATTCCC 1496754 Query 37515 CCTATAATCTTCATCGATTACTCCGCCTCCTACATCAAT-ACCT--TTTAGAGACAAACC 37571 |||||| ||||||| || || ||| |||||||||| | | | |||| | ||| || Sbjct 1496753 TCTATAAACTTCATCTATGACACCGGCTCCTACATCTGTGAAGTGCTTTACTGCCAAGCC 1496694 Query 37572 CGATCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTT 37631 || | |||| || |||||||||||| || | || ||| |||| |||||||| Sbjct 1496693 AGACCATGGAGTTACTCTTCCATAACACCCAGAAGGAACAGCTATCTGAATGTCTGTTTT 1496634 Query 37632 AATCAATTGTCTTTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATA 37679 | | || |||||||| ||| | || ||||| || || || || || Sbjct 1496633 CA--GAATGGCTTTCTCCATAGGCGGTATTGTATATTCATAGGCACTGTA 1496586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685971581633280