Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq786 152 4e-32 seq1138 100 2e-16 seq474 86.0 5e-12 >seq786 Length=828056 Score = 152 bits (168), Expect = 4e-32 Identities = 397/605 (66%), Gaps = 8/605 (1%) Strand=Plus/Plus Query 40672 GATACAATTTGAGAAATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCA 40731 || |||| ||||| | | ||||| |||| || || ||| | |||| ||||| || Sbjct 610033 GACACAACCTGAGAGGTGAATTTCCTCTGCTCACAACCAAATGAGTGTTCTGGAAGGGAG 610092 Query 40732 TTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAA 40791 || ||||| || | |||||||||||||| | || |||| |||| || | || Sbjct 610093 TTTTTGAAGAGTTGCTGTGGTTTATCAAAGGCTCCACAAATGGTAAGCAACTGTCCTCCG 610152 Query 40792 GAGGAGTGCACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTA- 40850 |||||| || ||| |||| | | || | | || | ||| | ||||| Sbjct 610153 AGGGAGTGAGAATATGGGATGCCAATGGGTCCCTAGATTTTTCGGACAGCCTGGGATTCT 610212 Query 40851 ---CAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTT 40907 || || ||| ||| || || || || |||||||| || ||| | |||||||| Sbjct 610213 CTGCATGACAGGAATGG----GACCTGGGCCCGGTTTATGGTTTCTAGTGGAGACATTTT 610268 Query 40908 GGAGCAAAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAG 40967 |||||| | || | | | || ||||| | ||||| | || || | || Sbjct 610269 GGAGCAGACTACAAAGACAGAGATTCAGATTACTCGGGCCAAGGAGTAGACCAGCTGCAA 610328 Query 40968 TGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGG 41027 || || || || || ||| || | || ||| | || ||| | || || ||| Sbjct 610329 AAAGTGATTGACACCATCAAAACCAACCCTGATGACAGAATATTAACCATATGTGCCTGG 610388 Query 41028 AACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTAC 41087 ||||||| ||| | | |||||||| |||| ||||| ||| | ||||| || || Sbjct 610389 AACCCAAAAGACCTTCCCCTGATGGCAATGCCTCCTTGCCATGCCCTCTGTCAATTCTAT 610448 Query 41088 GTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGG 41147 || ||||| || ||||| || ||| | || || || ||||| || ||||| || || Sbjct 610449 GTGGTAAATGGGGAGCTGTCTTGCCAACTTTACCAGAGGTCAGGAGATATGGGCCTGGGT 610508 Query 41148 GTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAAT 41207 || || || ||||| || ||||||| ||||| || | |||||||||||| | || Sbjct 610509 GTGCCCTTCAACATTGCCTGTTATGCCCTGCTTACCTCCATGATTGCACACATCACAGGC 610568 Query 41208 TTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATA 41267 | || || ||||| ||||| || || || ||| ||| || |||||| | ||||| || Sbjct 610569 CTGAAGCCAGGTGATTTTGTCCATACTTTGGGAAATGCACGTATTTATCTGAATCATATC 610628 Query 41268 GAGCC 41272 ||||| Sbjct 610629 GAGCC 610633 >seq1138 Length=537340 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | |||| || || ||||| ||||| || ||||||||||| ||||| Sbjct 334018 CAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 333959 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || ||||||||||| || || || || || || |||||| Sbjct 333958 ATACATTCTGAGATGTACAGTCTCCTTATTGACACTTATATTAAAGAT 333911 >seq474 Length=1313924 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| |||||||| ||||| |||||||| || ||||| | Sbjct 1043639 AAAATCCCTTTGATTTTATGGAAAACATTTCGTTAGAAGGGAAAACAAATTTCTTTGAGA 1043580 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || ||| || |||||||| | | |||||| Sbjct 1043579 AGCGAGTTTCTGAGTATCAGCGCTTTGCAGTCATG 1043545 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | ||||| || || || | |||||| ||| ||||||||||| |||| |||| Sbjct 1065926 GGTTTGTCATCTTTCCGATCCAGTACCCTGACATCTGGAAAATGTACAAACAAGCGCAGG 1065867 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || ||||||||||| || || Sbjct 1065866 CATCTTTCTGGACAGCAGAGGAGGT 1065842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396927268257760