Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq40 95.1 1e-14 seq306 84.2 2e-11 seq59 84.2 2e-11 seq1179 82.4 6e-11 >seq40 Length=4171579 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||| || | |||| | ||||| ||||| || ||| Sbjct 2179804 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 2179745 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| ||||| || || || || | ||||||||||| ||||||| || Sbjct 2179744 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTG 2179685 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||| ||| || || ||||| || || | ||||| ||||| || Sbjct 2179684 ACATTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 2179625 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 2179624 TTCACGAAGATTTGCAT 2179608 >seq306 Length=1726031 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| || || || || || |||| || |||||||| || | |||| | || || Sbjct 299812 ACCAGGTGCAAGGTGGACTCATTTTATATGTTGTAGTCTGACAGGGTGCGTCCATCCTCC 299753 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| |||||||| | || || | ||| || | || || | || || ||||| | Sbjct 299752 AGCTGCTTACCGGCAAATATCAGTCTCTGCTGGTTAGGTGGAATGCCTTCCTTATCTTGG 299693 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | | || | |||||| ||| || || || | ||| || | ||| Sbjct 299692 ATCTTGGTCTTGACATTCTCGATAGTGTCACTGGGCTCTACCTCAAAAGTGATGGTCTTG 299633 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| |||||||||||| | ||||| Sbjct 299632 CCTGTCAGGGTTTTCACAAAGCTCTGCAT 299604 >seq59 Length=3472997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| || || || || ||||| || || |||||||| || | || | | || || Sbjct 2114009 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCTGACAGGGTGGGGCCATCCTCC 2114068 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || ||||| | || || | |||||| || || || | || || ||||| | Sbjct 2114069 AGCTGCTTGCCGGCAAATATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCCTTATCTTGG 2114128 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | |||| ||| || || || ||||| || | ||| Sbjct 2114129 ATCTTGGCCTTGACATTCTCGATGGTGTGACTGGGCTCGACCTCAAGAGTGATGGTCTTG 2114188 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| || ||||||||||| ||||| Sbjct 2114189 CCCGTCAGGGTCTTCACAAAGATCTGCAT 2114217 >seq1179 Length=509559 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTT 131089 || ||||| ||| |||||||||||||| |||||||| ||||| ||||| ||||| Sbjct 474921 GCTAGGTCACAGCTGGCTTCCAAAGCTCCATAATAAATAGTTTCAAAGATTTGCTTATTC 474862 Query 131090 AATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149 ||| | |||| |||||| | ||| || |||| | || ||||| ||||| ||| Sbjct 474861 AATAACTGGGCTTCTGGGCTCTCAAATGGATATCTCATCAGGATGAAAGCATCTGCTAGA 474802 Query 131150 CCCTGTATCCCAA 131162 || |||| ||||| Sbjct 474801 CCTTGTACCCCAA 474789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424369114017024