Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1179 95.1 2e-14 seq1138 86.0 8e-12 >seq1179 Length=509559 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||||| ||||||||||| | |||| | || || || || Sbjct 473887 CTCATCTTTGCTAGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATAGTTCC 473828 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 ||| |||| ||||| |||||| || || | ||| |||||||||||||| || || || Sbjct 473827 CAAGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCC 473768 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 |||||| ||||| || | || || || | ||||| Sbjct 473767 CGTCTCTGTCTGAGACTCGATGATGGCATACCAAA 473733 >seq1138 Length=537340 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| ||||| || ||||||||||||||||| ||||| || || || |||||||||||| Sbjct 330912 ATATTCCCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATGTTTTCCAT 330971 Query 122430 AAAGTCAAATGGATT 122444 |||||||||||||| Sbjct 330972 GAAGTCAAATGGATT 330986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627175113139200