Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq786 165 6e-36 seq2476 118 8e-22 >seq786 Length=828056 Score = 165 bits (182), Expect = 6e-36 Identities = 476/722 (66%), Gaps = 13/722 (2%) Strand=Plus/Minus Query 111576 CATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCATCAGCAACAAAAT 111634 ||| || || | ||||| || ||||| || |||| | |||||| ||| | |||| Sbjct 610769 CATTTTAATCGTTGGATGTGGATTATAAC-CTTCAATCTGAAAGTCTTCAACTTTGAAAT 610711 Query 111635 CGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGG 111694 | ||||| ||||| || | ||||| || ||||| | || | || | ||| Sbjct 610710 CATCAATTGTCTCAACTTTTTGAAGGATTTTGAGCTTTGGGGAAGGTCTTGGTTCTCGCT 610651 Query 111695 TAAGCTGTAATTGTAAA-GGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACAA 111753 |||||| |||| | | |||| || ||||| | ||||| | | |||| ||| | | | Sbjct 610650 GAAGCTG-AATTCTCAGTGGCTCGATATGATTCAGATAAATACGTGCATTTCCCAAAGTA 610592 Query 111754 TGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTG 111813 |||| || || | |||| || || |||||||||||||||||| | || || || Sbjct 610591 TGGACAAAATCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGGAGGTAAGCAGGGCA 610532 Query 111814 TAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGA 111873 |||| |||||||| || |||||||| |||||||||||||| || || || || || || Sbjct 610531 TAACAGGCAATGTTGAAGGGCACACCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGG 610472 Query 111874 CATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCC 111933 || || || | | | |||||| |||||||| || |||| |||||||||| |||| Sbjct 610471 CAAGACAGCTCCCCATTTACCACATAGAATTGACAGAGGGCATGGCAAGGAGGCATTGCC 610412 Query 111934 ATC----CCATTCATAAAGGGTCCCCATGCACACATGATCATCCTTCTGCTGTAGCGATT 111989 ||| | | |||| ||| ||||| ||| | | ||||| | | || Sbjct 610411 ATCAGGGGAAGGTCTTTTGGGT-TCCAGGCACATATGGTTAATATTCTGTCATCAGGGTT 610353 Query 111990 ATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGC 112049 || ||| || || || || |||||||||| |||| || | ||||| | Sbjct 610352 GGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGGCCCGAGTAATCTGA 610293 Query 112050 CTGACATCCAGTGTATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAG 112109 | | | |||| ||| ||| | |||||||| | ||| ||||||| || ||||| Sbjct 610292 ATCTCTGTCTTTGTAGTCTGCTCCAAAATGTCTCCACTAGAAACCATAAACCGGGCCCAG 610233 Query 112110 ATCTCCCGGGGCTGT-AT-CTGGAAATTGCTCTCTATTCAACAAATCACTTCTAATATGA 112167 |||| |||| || | | ||| | || | | | ||||| || Sbjct 610232 --GTCCCATTCCTGTCATGCAGAGAATCCCAGGCTGTCCGAAAAATCTAGGGACCCATTG 610175 Query 112168 GGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATA 112227 | || ||| || ||||||| | || || | | | |||||||||| ||| | ||| Sbjct 610174 GCATCCCATATTCTCACTCCCTCGGAGGACAGTTGCTTACCATTTGTGGAGCCTTTGATA 610115 Query 112228 AACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGA 112287 ||||| ||||| ||||| | ||| || |||||| |||||| ||| || || ||||| ||| Sbjct 610114 AACCACAGCAACTCTTCAAAAACTCCCTTCCAGAACACTCATTTGGTTGTGAGCAGAGGA 610055 Query 112288 AA 112289 || Sbjct 610054 AA 610053 >seq2476 Length=158986 Score = 118 bits (130), Expect = 8e-22 Identities = 124/162 (77%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||||||||| |||||||| || || || || || |||||||| || |||||| Sbjct 45746 CCCGTGATGTGTGCTATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGCACA 45687 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTT---TATTTTGTGAC 111894 || |||||||||||||| || || || || || || || || || | ||||| | Sbjct 45686 CCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTT---CC 45630 Query 111895 ACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 ||||| |||||||| || |||| |||||||||| ||||||| Sbjct 45629 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 45588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391424198687776