Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq474 86.0 7e-12 seq1138 84.2 2e-11 >seq474 Length=1313924 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 60015 TTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGC 60074 ||||||||||| ||||| |||||| |||||||| || ||| | ||||||||||| || Sbjct 1049958 TTCTTCTCTGGGTCGTTTGCTGCTATATTCTGGCTGAAGAAGAGAGGCCTCATGCCAGGA 1049899 Query 60075 CTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || | || || ||||||||||| | ||||||||| Sbjct 1049898 CTCACGTTTTCAAACGAGCTGATCAGCAGGGACGAGG 1049862 >seq1138 Length=537340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| |||||| || |||||||||||||| || || | || ||||||||| Sbjct 332863 GCCTTTGCTGCCGTGGAGGGGATCTTCTTCTCTGGTTCTTTTGCATCAATATTCTGGCTC 332804 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| || || ||||| ||||| | || ||||| ||||| ||| | | |||||| Sbjct 332803 AAGAAGCGGGGACTGATGCCCGGCCTCACCTTTTCCAATGAGCTCATTAGCAGAGACGAG 332744 Query 60111 G 60111 | Sbjct 332743 G 332743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547776392762880